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  1. 2023

  2. Accurate isoform discovery with IsoQuant using long reads

    Prjibelski, A. D., Lapidus, A. L., Joglekar, A., Smetanin, A., Mikheenko, A., Jarroux, J. & Tilgner, H. U., Jul 2023, In: Nature Biotechnology. 41, 7, p. 915-918 4 p.

    Research output: Contribution to journal › Article › peer-review

  3. WebQUAST: online evaluation of genome assemblies

    Михеенко, А. А., Савельев, В. В., Hirsch, P. & Гуревич, А. А., 17 May 2023, In: Nucleic Acids Research. 51, W1, p. 601-606 6 p.

    Research output: Contribution to journal › Article › peer-review

  4. 2022

  5. Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

    Bzikadze, A., Mikheenko, A. & Певзнер, П. А., 15 Nov 2022, (E-pub ahead of print) In: Genome Research.

    Research output: Contribution to journal › Article › peer-review

  6. Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue

    Hardwick, S. A., Hu, W., Joglekar, A., Fan, L., Collier, P. G., Foord, C., Balacco, J., Lanjewar, S., Sampson, M. M. G., Koopmans, F., Prjibelski, A. D., Mikheenko, A., Belchikov, N., Jarroux, J., Lucas, A. B., Palkovits, M., Luo, W., Milner, T. A., Ndhlovu, L. C., Smit, A. B. & 10 others, Trojanowski, J. Q., Lee, V. M. Y., Fedrigo, O., Sloan, S. A., Tombácz, D., Ross, M. E., Jarvis, E., Boldogkői, Z., Gan, L. & Tilgner, H. U., Jul 2022, In: Nature Biotechnology. 40, 7, p. 1082-1092 11 p.

    Research output: Contribution to journal › Article › peer-review

  7. Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

    Mc Cartney, A. M., Shafin, K., Alonge, M., Bzikadze, A. V., Formenti, G., Fungtammasan, A., Howe, K., Jain, C., Koren, S., Logsdon, G. A., Miga, K. H., Mikheenko, A., Paten, B., Shumate, A., Soto, D. C., Sović, I., Wood, J. M. D., Zook, J. M., Phillippy, A. M. & Rhie, A., Jun 2022, In: Nature Methods. 19, 6, p. 687-695 9 p.

    Research output: Contribution to journal › Article › peer-review

  8. IsoQuant: a tool for accurate novel isoform discovery with long reads

    Prjibelski, A., Mikheenko, A., Joglekar, A., Smetanin, A., Jarroux, J., Lapidus, A. & Tilgner, H. U., 26 Apr 2022, (E-pub ahead of print) In: Nature Biotechnology.

    Research output: Contribution to journal › Article › peer-review

  9. Complete genomic and epigenetic maps of human centromeres

    T2T consortium, 1 Apr 2022, In: Science. 376, 6588, eabl4178.

    Research output: Contribution to journal › Article › peer-review

  10. Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns

    Mikheenko, A., Prjibelski, A. D., Joglekar, A. & Tilgner, H. U., 1 Apr 2022, In: Genome Research. 32, 4, p. 726-737 12 p.

    Research output: Contribution to journal › Article › peer-review

  11. The complete sequence of a human genome

    T2T consortium, 1 Apr 2022, In: Science. 376, 6588, p. 44-53 10 p.

    Research output: Contribution to journal › Article › peer-review

  12. 2021

  13. The structure, function and evolution of a complete human chromosome 8

    Logsdon, G. A., Vollger, M. R., Hsieh, P. H., Mao, Y., Liskovykh, M. A., Koren, S., Nurk, S., Mercuri, L., Dishuck, P. C., Rhie, A., de Lima, L. G., Dvorkina, T., Porubsky, D., Harvey, W. T., Mikheenko, A., Kremitzki, M., Graves-Lindsay, T. A., Jain, C., Hoekzema, K., Murali, S. C. & 11 others, Munson, K. M., Baker, C., Sorensen, M., Lewis, A. M., Surti, U., Gerton, J. L., Larionov, V., Ventura, M., Miga, K. H., Phillippy, A. M. & Eichler, E. E., 6 May 2021, In: Nature. 593, 7857, p. 101-107 7 p.

    Research output: Contribution to journal › Article › peer-review

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