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  1. 2020

  2. Extending rnaSPAdes functionality for hybrid transcriptome assembly

    Prjibelski, A. D., Puglia, G. D., Antipov, D., Bushmanova, E., Giordano, D., Mikheenko, A., Vitale, D. & Lapidus, A., 24 Jul 2020, In: BMC Bioinformatics. 21, Suppl 12, p. 302 9 p., 302.

    Research output: Contribution to journal › Article › peer-review

  3. TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats

    Mikheenko, A., Bzikadze, A., Gurevich, A., Miga, K. & Певзнер, П. А., 1 Jul 2020, In: Bioinformatics. 36, 1, p. i75–i83

    Research output: Contribution to journal › Article › peer-review

  4. 2019

  5. MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

    Cao, L., Gurevich, A., Alexander, K. L., Naman, C. B., Leão, T., Glukhov, E., Luzzatto-Knaan, T., Vargas, F., Quinn, R., Bouslimani, A., Nothias, L. F., Singh, N. K., Sanders, J. G., Benitez, R. A. S., Thompson, L. R., Hamid, M. N., Morton, J. T., Mikheenko, A., Shlemov, A., Korobeynikov, A. & 8 others, Friedberg, I., Knight, R., Venkateswaran, K., Gerwick, W. H., Gerwick, L., Dorrestein, P. C., Pevzner, P. A. & Mohimani, H., 18 Dec 2019, In: Cell Systems. 9, 6, p. 600-608.e4 13 p.

    Research output: Contribution to journal › Article › peer-review

  6. Extending rnaSPAdes functionality for hybrid transcriptome assembly

    Prjibelski, A., Bushmanova, E., Giordano, D., Mikheenko, A., Puglia, G., Antipov, D., Viatale, D. & Lapidus, A., 8 Nov 2019, In: BMC Bioinformatics. 20, S17, 2 p., O9.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  7. Assembly Graph Browser: interactive visualization of assembly graphs

    Mikheenko, A. & Kolmogorov, M., 15 Sep 2019, In: Bioinformatics. 35, 18, p. 3476-3478 3 p.

    Research output: Contribution to journal › Article › peer-review

  8. 2018

  9. Dereplication of microbial metabolites through database search of mass spectra

    Mohimani, H., Гуревич, А. А., Шлемов, А. Ю., Михеенко, А. А., Коробейников, А. И., Cao, L., Щербин, Е., Nothias, L-F., Dorrestein, P. C. & Певзнер, П. А., 1 Dec 2018, In: Nature Communications. 9, 1, 12 p., 4035.

    Research output: Contribution to journal › Article › peer-review

  10. Versatile genome assembly evaluation with QUAST-LG

    Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D. & Gurevich, A., 1 Jul 2018, In: Bioinformatics. 34, 13, p. i142-i150 9 p.

    Research output: Contribution to journal › Article › peer-review

  11. Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra

    Гуревич, А. А., Михеенко, А. А., Шлемов, А. Ю., Коробейников, А. И., Mohimani, H. & Певзнер, П. А., 1 Mar 2018, In: Nature Microbiology. 3, 3, p. 319-327 9 p.

    Research output: Contribution to journal › Article › peer-review

  12. 2017

  13. Dereplication of peptidic natural products through database search of mass spectra

    Mohimani, H., Gurevich, A., Mikheenko, A., Garg, N., Nothias, L. F., Ninomiya, A., Takada, K., Dorrestein, P. C. & Pevzner, P. A., 1 Jan 2017, In: Nature Chemical Biology. 13, 1, p. 30-37 8 p.

    Research output: Contribution to journal › Article › peer-review

  14. 2016

  15. Icarus: Visualizer for de novo assembly evaluation

    Mikheenko, A., Valin, G., Prjibelski, A., Saveliev, V. & Gurevich, A., 1 Nov 2016, In: Bioinformatics. 32, 21, p. 3321-3323 3 p.

    Research output: Contribution to journal › Article › peer-review

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