1. 2023
  2. Protocol for refining metagenomic binning with BinSPreader 

    Очкалова, С. Д., Толстоганов, И. Н., Лапидус, А. Л. & Коробейников, А. И., 15 Sep 2023, In: STAR Protocols. 4, 3, 102417.

    Research output: Contribution to journalArticlepeer-review

  3. Benchmarking state-of-the-art approaches for norovirus genome assembly in metagenome sample

    Мелешко, Д. А. & Коробейников, А. И., 29 Jul 2023, In: Biology. 12, 8, 1066.

    Research output: Contribution to journalArticlepeer-review

  4. 2022
  5. MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data

    Шафранская, Д. Д., Kale, V., Finn, R., Лапидус, А. Л., Коробейников, А. И. & Пржибельский, А. Д., 28 Oct 2022, In: Frontiers in Microbiology. 13, 981458.

    Research output: Contribution to journalArticlepeer-review

  6. BinSPreader: Refine binning results for fuller MAG reconstruction

    Tolstoganov, I., Kamenev, Y., Kruglikov, R., Ochkalova, S. & Korobeynikov, A., 19 Aug 2022, In: iScience. 25, 8, 104770.

    Research output: Contribution to journalArticlepeer-review

  7. Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities

    Bickhart, D. M., Kolmogorov, M., Tseng, E., Portik, D. M., Коробейников, А. И., Толстоганов, И. Н., Uritskiy, G., Liachko, I., Sullivan, S. T., Shin, S. B., Zorea, A., Andreu, V. P., Panke-Buisse, K., Medema, M. H., Mizrahi, I., Певзнер, П. А. & Smith, T. P. L., May 2022, In: Nature Biotechnology. 40, 5, p. 711-719 9 p.

    Research output: Contribution to journalArticlepeer-review

  8. Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, L. H., Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, J., Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, S., Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, S. J., Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 8 Apr 2022, In: Nature Methods. 19, 4, p. 429-440 12 p.

    Research output: Contribution to journalArticlepeer-review

  9. Hi-C Metagenomics in the ICU: Exploring Clinically Relevant Features of Gut Microbiome in Chronically Critically Ill Patients

    Ivanova, V., Chernevskaya, E., Vasiluev, P., Ivanov, A., Tolstoganov, I., Шафранская, Д. Д., Ulyantsev, V., Korobeynikov, A., Razin, S. V., Beloborodova, N., Ulianov, S. V. & Tyakht, A., 3 Feb 2022, In: Frontiers in Microbiology. 12, 17 p., 770323.

    Research output: Contribution to journalArticlepeer-review

  10. Petabase-scale sequence alignment catalyses viral discovery

    Edgar, R. C., Taylor, J., Lin, V., Altman, T., Barbera, P., Meleshko, D., Lohr, D., Novakovsky, G., Buchfink, B., Al-Shayeb, B., Banfield, J. F., de la Peña, M., Korobeynikov, A., Chikhi, R. & Babaian, A., 3 Feb 2022, In: Nature. 602, 7895, p. 142-147 6 p.

    Research output: Contribution to journalArticlepeer-review

  11. 2021
  12. Fifth International Conference “Bioinformatics: from Algorithms to Applications” (BiATA 2021)

    Лапидус, А. Л. & Коробейников, А. И., 1 Dec 2021, In: BMC Bioinformatics. 22, Suppl 16

    Research output: Contribution to journalEditorial

  13. Nerpa: A tool for discovering biosynthetic gene clusters of bacterial nonribosomal peptides

    Kunyavskaya, O., Tagirdzhanov, A. M., Caraballo-Rodríguez, A. M., Nothias, L. F., Dorrestein, P. C., Korobeynikov, A., Mohimani, H. & Gurevich, A., 11 Oct 2021, In: Metabolites. 11, 10, 20 p., 693.

    Research output: Contribution to journalArticlepeer-review

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