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  1. 2020

  2. SPAligner: Alignment of long diverged molecular sequences to assembly graphs

    Dvorkina, T., Antipov, D., Korobeynikov, A. & Nurk, S., 24 Jul 2020, In: BMC Bioinformatics. 21, Suppl 12, 306.

    Research output: Contribution to journal › Article › peer-review

  3. Using SPAdes De Novo Assembler

    Prjibelski, A., Antipov, D., Meleshko, D., Lapidus, A. & Korobeynikov, A., 19 Jun 2020, In: Current Protocols in Bioinformatics. 70, 1, e102.

    Research output: Contribution to journal › Article › peer-review

  4. MGnify: the microbiome analysis resource in 2020

    Mitchell, A. L., Almeida, A., Beracochea, M., Boland, M., Burgin, J., Cochrane, G., Crusoe, M. R., Kale, V., Potter, S. C., Richardson, L. J., Sakharova, E., Scheremetjew, M., Korobeynikov, A., Shlemov, A., Kunyavskaya, O., Lapidus, A. & Finn, R. D., 1 Jan 2020, In: Nucleic Acids Research. 48, D1, p. D570-D578 9 p.

    Research output: Contribution to journal › Article › peer-review

  5. 2019

  6. MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

    Cao, L., Gurevich, A., Alexander, K. L., Naman, C. B., Leão, T., Glukhov, E., Luzzatto-Knaan, T., Vargas, F., Quinn, R., Bouslimani, A., Nothias, L. F., Singh, N. K., Sanders, J. G., Benitez, R. A. S., Thompson, L. R., Hamid, M. N., Morton, J. T., Mikheenko, A., Shlemov, A., Korobeynikov, A. & 8 others, Friedberg, I., Knight, R., Venkateswaran, K., Gerwick, W. H., Gerwick, L., Dorrestein, P. C., Pevzner, P. A. & Mohimani, H., 18 Dec 2019, In: Cell Systems. 9, 6, p. 600-608.e4 13 p.

    Research output: Contribution to journal › Article › peer-review

  7. CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

    Kondratenko, Y., Korobeynikov, A. & Lapidus, A., 8 Nov 2019, In: BMC Bioinformatics. 20, Suppl 17, p. 516 P6.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  8. PathRacer: racing profile HMM paths on assembly graph

    Shlemov, A. & Korobeynikov, A., 8 Nov 2019, In: BMC Bioinformatics. 20, Suppl 17, 1 p., О10.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  9. Third international conference "Bioinformatics from Algorithms to Applications" (BiATA 2019)

    Korobeynikov, A. & Lapidus, A., 8 Nov 2019, In: BMC Bioinformatics. 20, Suppl 17, 1 p., 516.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  10. BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

    Meleshko, D., Mohimani, H., Tracanna, V., Hajirasouliha, I., Medema, M. H., Korobeynikov, A. & Pevzner, P. A., 1 Aug 2019, In: Genome Research. 29, 8, p. 1352-1362 11 p.

    Research output: Contribution to journal › Article › peer-review

  11. PathRacer: Racing Profile HMM Paths on Assembly Graph

    Shlemov, A. & Korobeynikov, A., 25 May 2019, 6th International Conference on Algorithms for Computational Biology. Martín-Vide, C., Vega-Rodríguez, M. A. & Holmes, I. (eds.). Springer Nature, p. 80-94 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  12. IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction

    Ershov, V., Тарасов, А., Lapidus, A. & Korobeynikov, A., 1 Feb 2019, In: Journal of Computational Biology. 26, 2, p. 124-127 4 p.

    Research output: Contribution to journal › Article › peer-review

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