High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T)

Tashkandy, N., Sabban, S., Fakieh, M., Meier-Kolthoff, J. P., Huang, S., Tindall, B. J., Rohde, M., Baeshen, M. N., Baeshen, N. A., Lapidus, A., Copeland, A., Pillay, M., Reddy, T. B. K., Huntemann, M., Pati, A., Ivanova, N., Markowitz, V., Woyke, T., Goeker, M., Klenk, H-P. & 2 others, Kyrpides, N. C. & Hahnke, R. L., 2016, In: Standards in Genomic Sciences. 11, 10 p.

Research output: Contribution to journal › Article › peer-review

Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland

Susanti, D., Johnson, E. F., Lapidus, A., Han, J., Reddy, T. B. K., Pilay, M., Ivanova, N. N., Markowitz, V. M., Woyke, T., Kyrpides, N. C. & Mukhopadhyay, B., 2016, In: Standards in Genomic Sciences. 11, 3, 3.

Research output: Contribution to journal › Article › peer-review

Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry [PLoS Genet, 11(12), (2015)]

de Wit, P. J. G. M., van der Burgt, A., Ökmen, B., Stergiopoulos, I., Abd-Elsalam, K. A., Aerts, A. L., Bahkali, A. H., Beenen, H. G., Chettri, P., Cox, M. P., Datema, E., de Vries, R. P., Dhillon, B., Ganley, A. R., Griffiths, S. A., Guo, Y., Hamelin, R. C., Henrissat, B., Shahjahan Kabir, M., Karimi Jashni, M. & 19 others, Kema, G., Klaubauf, S., Lapidus, A., Levasseur, A., Lindquist, E., Mehrabi, R., Ohm, R. A., Owen, T. J., Salamov, A., Schwelm, A., Schijlen, E., Sun, H., van den Burg, H. A., van Ham, R. C. H. J., Zhang, S., Goodwin, S. B., Grigoriev, I. V., Collemare, J. & Bradshaw, R. E., 22 Dec 2015, In: PLoS Genetics. 11, 12, e1005775.

Research output: Contribution to journal › Comment/debate › peer-review

Sequencing, biochemical characterization, crystal structure and molecular dynamics of cellobiohydrolase Cel7A from Geotrichum candidum 3C

Borisova, A. S., Eneyskaya, E. V., Bobrov, K. S., Jana, S., Logachev, A., Polev, D. E., Lapidus, A. L., Ibatullin, F. M., Saleem, U., Sandgren, M., Payne, C. M., Kulminskaya, A. A. & Stahlberg, J., Dec 2015, In: FEBS Journal. 282, 23, p. 4515-4537 23 p.

Research output: Contribution to journal › Article › peer-review

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564^T), a surface-associated member of the marine Roseobacter clade

Beyersmann, P. G., Chertkov, O., Petersen, J., Fiebig, A., Chen, A., Pati, A., Ivanova, N., Lapidus, A., Goodwin, L. A., Chain, P., Detter, J. C., Rohde, M., Gronow, S., Kyrpides, N. C., Woyke, T., Simon, M., Göker, M., Klenk, H. P. & Brinkhoff, T., 30 Oct 2015, In: Standards in Genomic Sciences. 8, 3, p. 403-419 17 p.

Research output: Contribution to journal › Article › peer-review

IgSimulator: a versatile immunosequencing simulator

Safonova, Y., Lapidus, A. & Lill, J., 1 Oct 2015, In: Bioinformatics. 31, 19, p. 3213-3215 3 p.

Research output: Contribution to journal › Article › peer-review

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4

Shetty, A. R., de Gannes, V., Obi, C. C., Lucas, S., Lapidus, A., Cheng, J. F., Goodwin, L. A., Pitluck, S., Peters, L., Mikhailova, N., Teshima, H., Han, C., Tapia, R., Land, M., Hauser, L. J., Kyrpides, N., Ivanova, N., Pagani, I., Chain, P. S. G., Denef, V. J. & 2 others, Woyke, T. & Hickey, W. J., 1 Aug 2015, In: Standards in Genomic Sciences. 10, AUGUST2015, 55.

Research output: Contribution to journal › Article › peer-review

Ig Repertoire Constructor: A novel algorithm for antibody repertoire construction and immunoproteogenomics analysis

Safonova, Y., Bonissone, S., Kurpilyansky, E., Starostina, E., Lapidus, A., Stinson, J., Depalatis, L., Sandoval, W., Lill, J. & Pevzner, P. A., 15 Jun 2015, In: Bioinformatics. 31, 12, p. i53-i61

Research output: Contribution to journal › Article › peer-review

Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

Hwang, C., Copeland, A., Lucas, S., Lapidus, A., Barry, K., del Rio, T. G., Dalin, E., Tice, H., Pitluck, S., Sims, D., Brettin, T., Bruce, D. C., Detter, J. C., Han, C. S., Schmutz, J., Larimer, F. W., Land, M. L., Hauser, L. J., Kyrpides, N., Lykidis, A. & 5 others, Richardson, P., Belieav, A., Sanford, R. A., Loeffler, F. E. & Fields, M. W., 2015, In: Microbiology Resource Announcements. 3, 1, 2 p., ARTN e01449-14.

Research output: Contribution to journal › Article › peer-review