Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring

Göker, M., Spring, S., Scheuner, C., Anderson, I., Zeytun, A., Nolan, M., Lucas, S., Tice, H., Del Rio, TG., Cheng, JF., Han, C., Tapia, R., Goodwin, LA., Pitluck, S., Liolios, K., Mavromatis, K., Pagani, I., Ivanova, N., Mikhailova, N., Pati, A. & 16 others, Chen, A., Palaniappan, K., Land, M., Hauser, L., Chang, YJ., Jeffries, CD., Rohde, M., Detter, JC., Woyke, T., Bristow, J., Eisen, JA., Markowitz, V., Hugenholtz, P., Kyrpides, NC., Klenk, HP. & Lapidus, A., 2014, In: Standards in Genomic Sciences. 9, p. 1105-1117

Research output: Contribution to journal › Article

Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology

Chernyaeva, E. N., Shulgina, M. V., Rotkevich, M. S., Dobrynin, P. V., Simonov, S. A., Shitikov, E. A., Ischenko, D. S., Karpova, I. Y., Kostryukova, E. S., Ilina, E. N., Govorun, V. M., Zhuravlev, V. Y., Manicheva, O. A., Yablonsky, P. K., Isaeva, Y. D., Nosova, E. Y., Mokrousov, I. V., Vyazovaya, A. A., Narvskaya, O. V., Lapidus, A. L. & 1 others, O'Brien, S. J., 2014, In: BMC Genomics. 15, 308, p. 1-8

Research output: Contribution to journal › Article

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

Kyrpides, N. C., Hugenholtz, P., Eisen, J. A., Woyke, T., Göker, M., Parker, C. T., Amann, R., Beck, B. J., Chain, P. S. G., Chun, J., Colwell, R. R., Danchin, A., Dawyndt, P., Dedeurwaerdere, T., DeLong, E. F., Detter, J. C., De Vos, P., Donohue, T. J., Dong, X-Z., Ehrlich, D. S. & 44 others, Fraser, C., Gibbs, R., Gilbert, J., Gilna, P., Glöckner, F. O., Jansson, J. K., Keasling, J. D., Knight, R., Labeda, D., Lapidus, A., Lee, J-S., Li, W-J., Ma, J., Markowitz, V., Moore, E. R. B., Morrison, M., Meyer, F., Nelson, K. E., Ohkuma, M., Ouzounis, C. A., Pace, N., Parkhill, J., Qin, N., Rossello-Mora, R., Sikorski, J., Smith, D., Sogin, M., Stevens, R., Stingl, U., Suzuki, K-I., Taylor, D., Tiedje, J. M., Tindall, B., Wagner, M., Weinstock, G., Weissenbach, J., White, O., Wang, J., Zhang, L., Zhou, Y-G., Field, D., Whitman, W. B., Garrity, G. M. & Klenk, H-P., 2014, In: PLoS Biology. 12, 8, p. 1-7

Research output: Contribution to journal › Article

Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252^T isolated from marine sediment

Breider, S., Teshima, H., Petersen, J., Chertkov, O., Dalingault, H., Chen, A., Pati, A., Ivanova, N., Lapidus, A., Goodwin, L. A., Chain, P., Detter, J. C., Rohde, M., Tindall, B. J., Kyrpides, N. C., Woyke, T., Simon, M., Göker, M., Klenk, H. P. & Brinkhoff, T., 1 Dec 2013, In: Standards in Genomic Sciences. 9, 3

Research output: Contribution to journal › Article › peer-review

Genome sequence of Phaeobacter daeponensis type strain (DSM 23529^T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis

Dogs, M., Teshima, H., Petersen, J., Fiebig, A., Chertkov, O., Dalingault, H., Chen, A., Pati, A., Goodwin, L. A., Chain, P., Detter, J. C., Ivanova, N., Lapidus, A., Rohde, M., Gronow, S., Kyrpides, N. C., Woyke, T., Simon, M., Göker, M., Klenk, H. P. & 1 others, Brinkhoff, T., 11 Nov 2013, In: Standards in Genomic Sciences. 9, 1, p. 142-159 18 p.

Research output: Contribution to journal › Article › peer-review

Erratum: Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

Morin, E., Kohler, A., Baker, A. R., Foulongne-Oriol, M., Lombard, V., Nagy, L. G., Ohm, R. A., Patyshakuliyeva, A., Brun, A., Aerts, A. L., Bailey, A. M., Billette, C., Coutinho, P. M., Deakin, G., Doddapaneni, H., Floudas, D., Grimwood, J., Hildén, K., Kües, U., Labutti, K. M. & 23 others, Lapidus, A., Lindquist, E. A., Lucas, S. M., Murat, C., Riley, R. W., Salamov, A. A., Schmutz, J., Subramanian, V., Wösten, H. A. B., Xu, J., Eastwood, D. C., Foster, G. D., Sonnenberg, A. S. M., Cullen, D., De Vries, R. P., Lundell, T., Hibbett, D. S., Henrissat, B., Burton, K. S., Kerrigan, R. W., Challen, M. P., Grigoriev, I. V. & Martin, F., 5 Mar 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 10, p. 17501-17506 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

Nurk, S., Bankevich, A., Antipov, D., Gurevich, A. A., Korobeynikov, A., Lapidus, A., Prjibelski, A. D., Pyshkin, A., Sirotkin, A., Sirotkin, Y., Stepanauskas, R., Clingenpeel, S. R., Woyke, T., McLean, J. S., Lasken, R., Tesler, G., Alekseyev, M. A. & Pevzner, P. A., 2013, In: Journal of Computational Biology. 20, 10, p. 714-737

Research output: Contribution to journal › Article › peer-review