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  1. 2016

  2. Comparative genomics of biotechnologically important yeasts

    Riley, R., Haridas, S., Wolfe, K. H., Lopes, M. R., Hittinger, C. T., Göker, M., Salamov, A. A., Wisecaver, J. H., Long, T. M., Calvey, C. H., Aerts, A. L., Barry, K. W., Choi, C., Clum, A., Coughlan, A. Y., Deshpande, S., Douglass, A. P., Hanson, S. J., Klenk, H. P., La Butti, K. M. & 19 others, Lapidus, A., Lindquist, E. A., Lipzen, A. M., Meier-Kolthoff, J. P., Ohm, R. A., Otillar, R. P., Pangilinan, J. L., Peng, Y., Rokas, A., Rosa, C. A., Scheuner, C., Sibirny, A. A., Slot, J. C., Stielow, J. B., Sun, H., Kurtzman, C. P., Blackwell, M., Grigoriev, I. V. & Jeffries, T. W., 30 Aug 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 35, p. 9882-9887 6 p.

    Research output: Contribution to journal › Article › peer-review

  3. RnaQUAST: A quality assessment tool for de novo transcriptome assemblies

    Bushmanova, E., Antipov, D., Lapidus, A., Suvorov, V. & Prjibelski, A. D., 15 Jul 2016, In: Bioinformatics. 32, 14, p. 2210-2212 3 p.

    Research output: Contribution to journal › Article › peer-review

  4. Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Panschin, I., Huang, S., Meier-Kolthoff, J. P., Tindall, B. J., Rohde, M., Verbarg, S., Lapidus, A., Han, J., Trong, S., Haynes, M., Reddy, T. B. K., Huntemann, M., Pati, A., Ivanova, N. N., Mavromatis, K., Markowitz, V., Woyke, T., Göker, M., Klenk, H. P., Kyrpides, N. C. & 1 others, Hahnke, R. L., 3 Jun 2016, In: Standards in Genomic Sciences. 11, 1, 37.

    Research output: Contribution to journal › Article › peer-review

  5. Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles

    Castanera, R., Lopez-Varas, L., Borgognone, A., LaButti, K., Lapidus, A., Schmutz, J., Grimwood, J., Perez, G., Pisabarro, A. G., Grigoriev, I. V., Stajich, J. E. & Ramirez, L., 1 Jun 2016, In: PLoS Genetics. 12, 6, 27 p., e1006108.

    Research output: Contribution to journal › Article › peer-review

  6. Fungi contribute critical but spatially varying roles in nitrogen and carbon cycling in acid mine drainage

    Mosier, A. C., Miller, C. S., Frischkorn, K. R., Ohm, R. A., Li, Z., LaButti, K., Lapidus, A., Lipzen, A., Chen, C., Johnson, J., Lindquist, E. A., Pan, C., Hettich, R. L., Grigoriev, I. V., Singer, S. W. & Banfield, J. F., 3 Mar 2016, (E-pub ahead of print) In: Frontiers in Microbiology. 7, 18 p.

    Research output: Contribution to journal › Article › peer-review

  7. Complete genome sequence of Methanospirillum hungatei type strain JF1

    Gunsalus, R. P., Cook, L. E., Crable, B., Rohlin, L., McDonald, E., Mouttaki, H., Sieber, J. R., Poweleit, N., Zhou, H., Lapidus, A. L., Daligault, H. E., Land, M., Gilna, P., Ivanova, N., Kyrpides, N., Culley, D. E. & McInerney, M. J., 6 Jan 2016, In: Standards in Genomic Sciences. 11, 1, 2.

    Research output: Contribution to journal › Article › peer-review

  8. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds

    Hwang, C., Copeland, A., Lucas, S., Лапидус, А., Barry, K., Detter, J. C., Glavina Del Rio, T., Hammon, N., Israni, S., Dalin, E., Tice, H., Pitluck, S., Chertkov, O., Brettin, T., Bruce, D., Han, C., Schmutz, J., Larimer, F., Land, M. L., Hauser, L. & 5 others, Kyrpides, N., Ye, Q., Zhou, J., Richardson, P. & Fields, M. W., 2016, In: Genome Announcements. 4, 6

    Research output: Contribution to journal › Article › peer-review

  9. Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes

    Melton, E. D., Sorokin, D. Y., Overmars, L., Chertkov, O., Clum, A., Pillay, M., Ivanova, N., Shapiro, N., Kyrpides, N. C., Woyke, T., Lapidus, A. L. & Muyzer, G., 2016, In: Standards in Genomic Sciences. 11, 9 p.

    Research output: Contribution to journal › Article › peer-review

  10. Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T))

    Kappler, U., Davenport, K., Beatson, S., Lapidus, A., Pan, C., Han, C., Montero-Calasanz, M. D. C., Land, M., Hauser, L., Rohde, M., Göker, M., Ivanova, N., Woyke, T., Klenk, H-P. & Kyrpides, N. C., 2016, In: Standards in Genomic Sciences. 11, 12 p., 38.

    Research output: Contribution to journal › Article › peer-review

  11. Draft genome of Prochlorothrix hollandica CCAP 1490/1T (CALU1027), the chlorophyll a/b-containing filamentous cyanobacterium: английский

    Velichko, N., Rayko, M., Chernyaeva, E., Lapidus, A. & Pinevich, A., 2016, In: Standards in Genomic Sciences. 11, 82, p. 1-7

    Research output: Contribution to journal › Article › peer-review

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