1. 2017
  2. Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile

    Melton, E. D., Sorokin, D. Y., Overmars, L., Lapidus, A. L., Pillay, M., Ivanova, N., del Rio, T. G., Kyrpides, N. C., Woyke, T. & Muyzer, G., 21 Sep 2017, In: Standards in Genomic Sciences. 12, 1, 57.

    Research output: Contribution to journalArticlepeer-review

  3. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    The Genome Standards Consortium, 8 Aug 2017, In: Nature Biotechnology. 35, 8, p. 725-731 7 p., PMID: 28787424.

    Research output: Contribution to journalReview articlepeer-review

  4. Permanent draft genome sequence of Desulfurococcus amylolyticus strain Z-533T, a peptide and starch degrader isolated from thermal springs in the Kamchatka Peninsula and Kunashir Island, Russia

    Susanti, D., Johnson, E. F., Lapidus, A., Han, J., Reddy, T. B. K., Mukherjee, S., Pillay, M., Perevalova, A. A., Ivanova, N. N., Woyke, T., Kyrpides, N. C. & Mukhopadhyay, B., 1 Apr 2017, In: Genome Announcements. 5, 15, e0007817.

    Research output: Contribution to journalArticlepeer-review

  5. Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

    de Vries, R. P., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Uchima, C. A., Anderluh, G., Asadollahi, M., Askin, M., Barry, K., Battaglia, E., Bayram, O., Benocci, T., Braus-Stromeyer, S. A., Caldana, C., Cánovas, D., Cerqueira, G. C., Chen, F., Chen, W., Choi, C. & 97 others, Clum, A., dos Santos, R. A. C., de Lima Damásio, A. R., Diallinas, G., Emri, T., Fekete, E., Flipphi, M., Freyberg, S., Gallo, A., Gournas, C., Habgood, R., Hainaut, M., Harispe, M. L., Henrissat, B., Hildén, K. S., Hope, R., Hossain, A., Karabika, E., Karaffa, L., Karányi, Z., Kra evec, N., Kuo, A., Kusch, H., LaButti, K., Lagendijk, E. L., Lapidus, A., Levasseur, A., Lindquist, E., Lipzen, A., Logrieco, A. F., MacCabe, A., Mäkelä, M. R., Malavazi, I., Melin, P., Meyer, V., Mielnichuk, N., Miskei, M., Molnár, A. P., Mulé, G., Ngan, C. Y., Orejas, M., Orosz, E., Ouedraogo, J. P., Overkamp, K. M., Park, H-S., Perrone, G., Piumi, F., Punt, P. J., Ram, A. F. J., Ramón, A., Rauscher, S., Record, E., Riaño-Pachón, D. M., Robert, V., Röhrig, J., Ruller, R., Salamov, A., Salih, N. S., Samson, R. A., Sándor, E., Sanguinetti, M., Schütze, T., Sep i, K., Shelest, E., Sherlock, G., Sophianopoulou, V., Squina, F. M., Sun, H., Susca, A., Todd, R. B., Tsang, A., Unkles, S. E., van de Wiele, N., van Rossen-Uffink, D., de Castro Oliveira, J. V., Vesth, T. C., Visser, J., Yu, J-H., Zhou, M., Andersen, M. R., Archer, D. B., Baker, S. E., Benoit, I., Brakhage, A. A., Braus, G. H., Fischer, R., Frisvad, J. C., Goldman, G. H., Houbraken, J., Oakley, B., Pócsi, I., Scazzocchio, C., Seiboth, B., vanKuyk, P. A., Wortman, J., Dyer, P. S. & Grigoriev, I. V., 14 Feb 2017, In: Genome Biology. 18, 1, PMID: 28196534.

    Research output: Contribution to journalArticlepeer-review

  6. Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

    Jiao, J. Y., Carro, L., Liu, L., Gao, X. Y., Zhang, X. T., Hozzein, W. N., Lapidus, A., Huntemann, M., Reddy, T. B. K., Varghese, N., Hadjithomas, M., Ivanova, N. N., Göker, M., Pillay, M., Eisen, J. A., Woyke, T., Klenk, H. P., Kyrpides, N. C. & Li, W. J., 3 Feb 2017, In: Standards in Genomic Sciences. 12, 1, 21.

    Research output: Contribution to journalArticlepeer-review

  7. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (vol 35, pg 725, 2017)

    Genome Standards Consortium, Feb 2017, In: Nature Biotechnology. 36, 2, p. 725 1 p.

    Research output: Contribution to journalArticlepeer-review

  8. 2016
  9. PlasmidSPAdes: Assembling plasmids from whole genome sequencing data

    Antipov, D., Hartwick, N., Shen, M., Raiko, M., Lapidus, A. & Pevzner, P. A., 15 Nov 2016, In: Bioinformatics. 32, 22, p. 3380-3387 8 p.

    Research output: Contribution to journalArticlepeer-review

  10. Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34

    Anderson, I. J., DasSarma, P., Lucas, S., Copeland, A., Lapidus, A., Del Rio, T. G., Tice, H., Dalin, E., Bruce, D. C., Goodwin, L., Pitluck, S., Sims, D., Brettin, T. S., Detter, J. C., Han, C. S., Larimer, F., Hauser, L., Land, M., Richardson, P., Cavicchioli, R. & 3 others, DasSarma, S., Woese, C. R. & Kyrpides, N. C., 10 Sep 2016, In: Standards in Genomic Sciences. 11, 1, p. 70

    Research output: Contribution to journalArticlepeer-review

  11. Comparative genomics of biotechnologically important yeasts

    Riley, R., Haridas, S., Wolfe, K. H., Lopes, M. R., Hittinger, C. T., Göker, M., Salamov, A. A., Wisecaver, J. H., Long, T. M., Calvey, C. H., Aerts, A. L., Barry, K. W., Choi, C., Clum, A., Coughlan, A. Y., Deshpande, S., Douglass, A. P., Hanson, S. J., Klenk, H. P., La Butti, K. M. & 19 others, Lapidus, A., Lindquist, E. A., Lipzen, A. M., Meier-Kolthoff, J. P., Ohm, R. A., Otillar, R. P., Pangilinan, J. L., Peng, Y., Rokas, A., Rosa, C. A., Scheuner, C., Sibirny, A. A., Slot, J. C., Stielow, J. B., Sun, H., Kurtzman, C. P., Blackwell, M., Grigoriev, I. V. & Jeffries, T. W., 30 Aug 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 35, p. 9882-9887 6 p.

    Research output: Contribution to journalArticlepeer-review

  12. RnaQUAST: A quality assessment tool for de novo transcriptome assemblies

    Bushmanova, E., Antipov, D., Lapidus, A., Suvorov, V. & Prjibelski, A. D., 15 Jul 2016, In: Bioinformatics. 32, 14, p. 2210-2212 3 p.

    Research output: Contribution to journalArticlepeer-review

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