WebQUAST: online evaluation of genome assemblies

Михеенко, А. А., Савельев, В. В., Hirsch, P. & Гуревич, А. А., 17 May 2023, In: Nucleic Acids Research. 51, W1, p. 601-606 6 p.

Research output: Contribution to journal › Article › peer-review

NPOmix: a machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters

Leão, T. F., Wang, M., da Silva, R., Gurevich, A., Bauermeister, A., Gomes, P. W. P., Brejnrod, A., Glukhov, E., Aron, A. T., Louwen, J. J. R., Kim, H. W., Reher, R., Fiore, M. F., van der Hooft, J. J. J., Gerwick, L., Gerwick, W. H., Bandeira, N. & Dorrestein, P. C., 26 Nov 2022, (E-pub ahead of print) In: PNAS Nexus. pgac257.

Research output: Contribution to journal › Article › peer-review

Critical Assessment of Metagenome Interpretation: the second round of challenges

Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, L. H., Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, J., Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, S., Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, S. J., Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 8 Apr 2022, In: Nature Methods. 19, 4, p. 429-440 12 p.

Research output: Contribution to journal › Article › peer-review

Selected abstracts of Bioinformatics: from Algorithms to Applications 2021 Conference: Computational prediction of biological activities of peptidic natural products

Садовская, А. Р. & Гуревич, А. А., 22 Dec 2021, In: BMC Bioinformatics.

Research output: Contribution to journal › Meeting Abstract

Nerpa: A tool for discovering biosynthetic gene clusters of bacterial nonribosomal peptides

Kunyavskaya, O., Tagirdzhanov, A. M., Caraballo-Rodríguez, A. M., Nothias, L. F., Dorrestein, P. C., Korobeynikov, A., Mohimani, H. & Gurevich, A., 11 Oct 2021, In: Metabolites. 11, 10, 20 p., 693.

Research output: Contribution to journal › Article › peer-review

MolDiscovery: learning mass spectrometry fragmentation of small molecules

Cao, L., Guler, M., Tagirdzhanov, A., Lee, Y. Y., Gurevich, A. & Mohimani, H., 17 Jun 2021, In: Nature Communications. 12, 1, 13 p., 3718.

Research output: Contribution to journal › Article › peer-review

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery

Behsaz, B., Bode, E., Gurevich, A., Shi, Y. N., Grundmann, F., Acharya, D., Caraballo-Rodríguez, A. M., Bouslimani, A., Panitchpakdi, M., Linck, A., Guan, C., Oh, J., Dorrestein, P. C., Bode, H. B., Pevzner, P. A. & Mohimani, H., 28 May 2021, In: Nature Communications. 12, 1, 17 p., 3225.

Research output: Contribution to journal › Article › peer-review

Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit

Meyer, F., Lesker, T-R., Koslicki, D., Fritz, A., Гуревич, А. А., Darling, A. E., Sczyrba, A., Bremges, A. & McHardy, A. C., Apr 2021, In: Nature Protocols. 16, 4, p. 1785-1801 17 p.

Research output: Contribution to journal › Review article › peer-review

A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria

Leão, T., Wang, M., Moss, N., da Silva, R., Sanders, J., Nurk, S., Gurevich, A., Humphrey, G., Reher, R., Zhu, Q., Belda-Ferre, P., Glukhov, E., Whitner, S., Alexander, K. L., Rex, R., Pevzner, P., Dorrestein, P. C., Knight, R., Bandeira, N., Gerwick, W. H. & 1 others, Gerwick, L., 6 Jan 2021, In: Marine Drugs. 19, 1, 16 p., 20.

Research output: Contribution to journal › Article › peer-review