Critical Assessment of Metagenome Interpretation - A benchmark of metagenomics software

Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Jørgensen, T. S., Shapiro, N., Blood, P. D., Gurevich, A., Bai, Y., Turaev, D., Demaere, M. Z. & 47 others, Chikhi, R., Nagarajan, N., Quince, C., Meyer, F., Balvočiutė, M., Hansen, L. H., Sørensen, S. J., Chia, B. K. H., Denis, B., Froula, J. L., Wang, Z., Egan, R., Don Kang, D., Cook, J. J., Deltel, C., Beckstette, M., Lemaitre, C., Peterlongo, P., Rizk, G., Lavenier, D., Wu, Y. W., Singer, S. W., Jain, C., Strous, M., Klingenberg, H., Meinicke, P., Barton, M. D., Lingner, T., Lin, H. H., Liao, Y. C., Silva, G. G. Z., Cuevas, D. A., Edwards, R. A., Saha, S., Piro, V. C., Renard, B. Y., Pop, M., Klenk, H. P., Göker, M., Kyrpides, N. C., Woyke, T., Vorholt, J. A., Schulze-Lefert, P., Rubin, E. M., Darling, A. E., Rattei, T. & McHardy, A. C., 31 Oct 2017, In: Nature Methods. 14, 11, p. 1063-1071 9 p.

Research output: Contribution to journal › Article › peer-review

Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules

Edlund, A., Garg, N., Mohimani, H., Gurevich, A., He, X., Shi, W., Dorrestein, P. C. & McLean, J. S., 29 Aug 2017, In: mSystems. 2, 4, e00058.

Research output: Contribution to journal › Article › peer-review

Dereplication of peptidic natural products through database search of mass spectra

Mohimani, H., Gurevich, A., Mikheenko, A., Garg, N., Nothias, L. F., Ninomiya, A., Takada, K., Dorrestein, P. C. & Pevzner, P. A., 1 Jan 2017, In: Nature Chemical Biology. 13, 1, p. 30-37 8 p.

Research output: Contribution to journal › Article › peer-review

Icarus: Visualizer for de novo assembly evaluation

Mikheenko, A., Valin, G., Prjibelski, A., Saveliev, V. & Gurevich, A., 1 Nov 2016, In: Bioinformatics. 32, 21, p. 3321-3323 3 p.

Research output: Contribution to journal › Article › peer-review

Spatial molecular architecture of the microbial community of a Peltigera lichen

Garg, N., Zeng, Y., Edlund, A., Melnik, A. V., Sanchez, L. M., Mohimani, H., Gurevich, A., Miao, V., Schiffler, S., Lim, Y. W., Luzzatto-Knaan, T., Cai, S., Rohwer, F., Pevzner, P. A., Cichewicz, R. H., Alexandrov, T. & Dorrestein, P. C., 1 Nov 2016, In: mSystems. 1, 6, e00139.

Research output: Contribution to journal › Article › peer-review

MetaQUAST: evaluation of metagenome assemblies.

Mikheenko, A., Saveliev, V. & Gurevich, A., 2016, In: Bioinformatics. 32, 7, p. 1088-1090

Research output: Contribution to journal › Article › peer-review

Assembling short reads from jumping libraries with large insert sizes

Vasilinetc, I., Prjibelski, A. D., Gurevich, A., Korobeynikov, A. & Pevzner, P. A., 2015, In: Bioinformatics. 31, 20, p. 3262-3268

Research output: Contribution to journal › Article

ExSPAnder: a universal repeat resolver for DNA fragment assembly

Prjibelski, A. D., Vasilinetc, I., Bankevich, A., Gurevich, A., Krivosheeva, T., Nurk, S., Pham, S., Korobeynikov, A., Lapidus, A. & Pevzner, P. A., 2014, In: Bioinformatics. 30, 12, p. I293-I301

Research output: Contribution to journal › Article