metaFlye: scalable long-read metagenome assembly using repeat graphs

Kolmogorov, M., Bickhart, D. M., Behsaz, B., Гуревич, А. А., Райко, М. П., Shin, S. B., Kuhn, K., Yuan, J., Polevikov, E., Smith, T. P. L. & Певзнер, П. А., 1 Nov 2020, In: Nature Methods. 17, 11, p. 1103-1110 8 p.

Research output: Contribution to journal › Article › peer-review

Feature-based molecular networking in the GNPS analysis environment

Nothias, L. F., Petras, D., Schmid, R., Dührkop, K., Rainer, J., Sarvepalli, A., Protsyuk, I., Ernst, M., Tsugawa, H., Fleischauer, M., Aicheler, F., Aksenov, A. A., Alka, O., Allard, P. M., Barsch, A., Cachet, X., Caraballo-Rodriguez, A. M., Da Silva, R. R., Dang, T., Garg, N. & 30 others, Gauglitz, J. M., Gurevich, A., Isaac, G., Jarmusch, A. K., Kameník, Z., Kang, K. B., Kessler, N., Koester, I., Korf, A., Le Gouellec, A., Ludwig, M., Martin H, C., McCall, L. I., McSayles, J., Meyer, S. W., Mohimani, H., Morsy, M., Moyne, O., Neumann, S., Neuweger, H., Nguyen, N. H., Nothias-Esposito, M., Paolini, J., Phelan, V. V., Pluskal, T., Quinn, R. A., Rogers, S., Shrestha, B., Tripathi, A. & van der Hooft, J. J. J., Sep 2020, In: Nature Methods. 17, 9, p. 905-908 4 p.

Research output: Contribution to journal › Article › peer-review

TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats

Mikheenko, A., Bzikadze, A., Gurevich, A., Miga, K. & Певзнер, П. А., 1 Jul 2020, In: Bioinformatics. 36, 1, p. i75–i83

Research output: Contribution to journal › Article › peer-review

De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments

Behsaz, B., Mohimani, H., Gurevich, A., Prjibelski, A., Fisher, M. F., Vargas, F., Smarr, L., Dorrestein, P. C., Mylne, J. S. & Pevzner, P. A., 18 Dec 2019, (E-pub ahead of print) In: Cell Systems.

Research output: Contribution to journal › Article › peer-review

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

Cao, L., Gurevich, A., Alexander, K. L., Naman, C. B., Leão, T., Glukhov, E., Luzzatto-Knaan, T., Vargas, F., Quinn, R., Bouslimani, A., Nothias, L. F., Singh, N. K., Sanders, J. G., Benitez, R. A. S., Thompson, L. R., Hamid, M. N., Morton, J. T., Mikheenko, A., Shlemov, A., Korobeynikov, A. & 8 others, Friedberg, I., Knight, R., Venkateswaran, K., Gerwick, W. H., Gerwick, L., Dorrestein, P. C., Pevzner, P. A. & Mohimani, H., 18 Dec 2019, In: Cell Systems. 9, 6, p. 600-608.e4 13 p.

Research output: Contribution to journal › Article › peer-review

NPS: scoring and evaluating the statistical significance of peptidic natural product–spectrum matches

Tagirdzhanov, A. M., Shlemov, A. & Gurevich, A., 15 Jul 2019, In: Bioinformatics. 35, 14, p. I315-I323 9 p., btz374.

Research output: Contribution to journal › Article › peer-review

Dereplication of microbial metabolites through database search of mass spectra

Mohimani, H., Гуревич, А. А., Шлемов, А. Ю., Михеенко, А. А., Коробейников, А. И., Cao, L., Щербин, Е., Nothias, L-F., Dorrestein, P. C. & Певзнер, П. А., 1 Dec 2018, In: Nature Communications. 9, 1, 12 p., 4035.

Research output: Contribution to journal › Article › peer-review

Versatile genome assembly evaluation with QUAST-LG

Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D. & Gurevich, A., 1 Jul 2018, In: Bioinformatics. 34, 13, p. i142-i150 9 p.

Research output: Contribution to journal › Article › peer-review

Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra

Гуревич, А. А., Михеенко, А. А., Шлемов, А. Ю., Коробейников, А. И., Mohimani, H. & Певзнер, П. А., 1 Mar 2018, In: Nature Microbiology. 3, 3, p. 319-327 9 p.

Research output: Contribution to journal › Article › peer-review