Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование
Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. / Dogs, Marco; Teshima, Hazuki; Petersen, Jörn; Fiebig, Anne; Chertkov, Olga; Dalingault, Hajnalka; Chen, Amy; Pati, Amrita; Goodwin, Lynne A.; Chain, Patrick; Detter, John C.; Ivanova, Natalia; Lapidus, Alla; Rohde, Manfred; Gronow, Sabine; Kyrpides, Nikos C.; Woyke, Tanja; Simon, Meinhard; Göker, Markus; Klenk, Hans Peter; Brinkhoff, Thorsten.
в: Standards in Genomic Sciences, Том 9, № 1, 11.11.2013, стр. 142-159.Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование
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TY - JOUR
T1 - Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis
AU - Dogs, Marco
AU - Teshima, Hazuki
AU - Petersen, Jörn
AU - Fiebig, Anne
AU - Chertkov, Olga
AU - Dalingault, Hajnalka
AU - Chen, Amy
AU - Pati, Amrita
AU - Goodwin, Lynne A.
AU - Chain, Patrick
AU - Detter, John C.
AU - Ivanova, Natalia
AU - Lapidus, Alla
AU - Rohde, Manfred
AU - Gronow, Sabine
AU - Kyrpides, Nikos C.
AU - Woyke, Tanja
AU - Simon, Meinhard
AU - Göker, Markus
AU - Klenk, Hans Peter
AU - Brinkhoff, Thorsten
PY - 2013/11/11
Y1 - 2013/11/11
N2 - TF-218T is the type strain of the species Phaeobacter daeponensis Yoon et al. 2007, a facultatively anaerobic Phaeobacter species isolated from tidal flats. Here we describe the draft genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. We analyzed the genome for genes involved in secondary metabo-lite production and its anaerobic lifestyle, which have also been described for its closest rela-tive Phaeobacter caeruleus. The 4,642,596 bp long genome of strain TF-218T contains 4,310 protein-coding genes and 78 RNA genes including four rRNA operons and consists of five re-plicons: one chromosome and four extrachromosomal elements with sizes of 276 kb, 174 kb, 117 kb and 90 kb. Genome analysis showed that TF-218T possesses all of the genes for indigoidine biosynthesis, and on specific media the strain showed a blue pigmentation. We also found genes for dissimilatory nitrate reduction, gene-transfer agents, NRPS/ PKS genes and signaling systems homologous to the LuxR/I system.
AB - TF-218T is the type strain of the species Phaeobacter daeponensis Yoon et al. 2007, a facultatively anaerobic Phaeobacter species isolated from tidal flats. Here we describe the draft genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. We analyzed the genome for genes involved in secondary metabo-lite production and its anaerobic lifestyle, which have also been described for its closest rela-tive Phaeobacter caeruleus. The 4,642,596 bp long genome of strain TF-218T contains 4,310 protein-coding genes and 78 RNA genes including four rRNA operons and consists of five re-plicons: one chromosome and four extrachromosomal elements with sizes of 276 kb, 174 kb, 117 kb and 90 kb. Genome analysis showed that TF-218T possesses all of the genes for indigoidine biosynthesis, and on specific media the strain showed a blue pigmentation. We also found genes for dissimilatory nitrate reduction, gene-transfer agents, NRPS/ PKS genes and signaling systems homologous to the LuxR/I system.
KW - Facultative anaerobe
KW - Indigoidine
KW - Marine microbiology
KW - Rhodobacteraceae
KW - Roseobacter clade
UR - http://www.scopus.com/inward/record.url?scp=84887052328&partnerID=8YFLogxK
U2 - 10.4056/sigs.4287962
DO - 10.4056/sigs.4287962
M3 - Article
AN - SCOPUS:84887052328
VL - 9
SP - 142
EP - 159
JO - Standards in Genomic Sciences
JF - Standards in Genomic Sciences
SN - 1944-3277
IS - 1
ER -
ID: 36051960