Standard

Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. / Dogs, Marco; Teshima, Hazuki; Petersen, Jörn; Fiebig, Anne; Chertkov, Olga; Dalingault, Hajnalka; Chen, Amy; Pati, Amrita; Goodwin, Lynne A.; Chain, Patrick; Detter, John C.; Ivanova, Natalia; Lapidus, Alla; Rohde, Manfred; Gronow, Sabine; Kyrpides, Nikos C.; Woyke, Tanja; Simon, Meinhard; Göker, Markus; Klenk, Hans Peter; Brinkhoff, Thorsten.

In: Standards in Genomic Sciences, Vol. 9, No. 1, 11.11.2013, p. 142-159.

Research output: Contribution to journal › Article › peer-review

Harvard

Dogs, M, Teshima, H, Petersen, J, Fiebig, A, Chertkov, O, Dalingault, H, Chen, A, Pati, A, Goodwin, LA, Chain, P, Detter, JC, Ivanova, N, Lapidus, A, Rohde, M, Gronow, S, Kyrpides, NC, Woyke, T, Simon, M, Göker, M, Klenk, HP & Brinkhoff, T 2013, 'Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis', Standards in Genomic Sciences, vol. 9, no. 1, pp. 142-159. https://doi.org/10.4056/sigs.4287962

APA

Dogs, M., Teshima, H., Petersen, J., Fiebig, A., Chertkov, O., Dalingault, H., Chen, A., Pati, A., Goodwin, L. A., Chain, P., Detter, J. C., Ivanova, N., Lapidus, A., Rohde, M., Gronow, S., Kyrpides, N. C., Woyke, T., Simon, M., Göker, M., ... Brinkhoff, T. (2013). Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. Standards in Genomic Sciences, 9(1), 142-159. https://doi.org/10.4056/sigs.4287962

Vancouver

Dogs M, Teshima H, Petersen J, Fiebig A, Chertkov O, Dalingault H et al. Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. Standards in Genomic Sciences. 2013 Nov 11;9(1):142-159. https://doi.org/10.4056/sigs.4287962

Author

Dogs, Marco ; Teshima, Hazuki ; Petersen, Jörn ; Fiebig, Anne ; Chertkov, Olga ; Dalingault, Hajnalka ; Chen, Amy ; Pati, Amrita ; Goodwin, Lynne A. ; Chain, Patrick ; Detter, John C. ; Ivanova, Natalia ; Lapidus, Alla ; Rohde, Manfred ; Gronow, Sabine ; Kyrpides, Nikos C. ; Woyke, Tanja ; Simon, Meinhard ; Göker, Markus ; Klenk, Hans Peter ; Brinkhoff, Thorsten. / Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. In: Standards in Genomic Sciences. 2013 ; Vol. 9, No. 1. pp. 142-159.

BibTeX

@article{52618627a58348e583d3338f90b766d7,
title = "Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis",
abstract = "TF-218T is the type strain of the species Phaeobacter daeponensis Yoon et al. 2007, a facultatively anaerobic Phaeobacter species isolated from tidal flats. Here we describe the draft genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. We analyzed the genome for genes involved in secondary metabo-lite production and its anaerobic lifestyle, which have also been described for its closest rela-tive Phaeobacter caeruleus. The 4,642,596 bp long genome of strain TF-218T contains 4,310 protein-coding genes and 78 RNA genes including four rRNA operons and consists of five re-plicons: one chromosome and four extrachromosomal elements with sizes of 276 kb, 174 kb, 117 kb and 90 kb. Genome analysis showed that TF-218T possesses all of the genes for indigoidine biosynthesis, and on specific media the strain showed a blue pigmentation. We also found genes for dissimilatory nitrate reduction, gene-transfer agents, NRPS/ PKS genes and signaling systems homologous to the LuxR/I system.",
keywords = "Facultative anaerobe, Indigoidine, Marine microbiology, Rhodobacteraceae, Roseobacter clade",
author = "Marco Dogs and Hazuki Teshima and J{\"o}rn Petersen and Anne Fiebig and Olga Chertkov and Hajnalka Dalingault and Amy Chen and Amrita Pati and Goodwin, {Lynne A.} and Patrick Chain and Detter, {John C.} and Natalia Ivanova and Alla Lapidus and Manfred Rohde and Sabine Gronow and Kyrpides, {Nikos C.} and Tanja Woyke and Meinhard Simon and Markus G{\"o}ker and Klenk, {Hans Peter} and Thorsten Brinkhoff",
year = "2013",
month = nov,
day = "11",
doi = "10.4056/sigs.4287962",
language = "English",
volume = "9",
pages = "142--159",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "1",

}

RIS

TY - JOUR

T1 - Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis

AU - Dogs, Marco

AU - Teshima, Hazuki

AU - Petersen, Jörn

AU - Fiebig, Anne

AU - Chertkov, Olga

AU - Dalingault, Hajnalka

AU - Chen, Amy

AU - Pati, Amrita

AU - Goodwin, Lynne A.

AU - Chain, Patrick

AU - Detter, John C.

AU - Ivanova, Natalia

AU - Lapidus, Alla

AU - Rohde, Manfred

AU - Gronow, Sabine

AU - Kyrpides, Nikos C.

AU - Woyke, Tanja

AU - Simon, Meinhard

AU - Göker, Markus

AU - Klenk, Hans Peter

AU - Brinkhoff, Thorsten

PY - 2013/11/11

Y1 - 2013/11/11

N2 - TF-218T is the type strain of the species Phaeobacter daeponensis Yoon et al. 2007, a facultatively anaerobic Phaeobacter species isolated from tidal flats. Here we describe the draft genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. We analyzed the genome for genes involved in secondary metabo-lite production and its anaerobic lifestyle, which have also been described for its closest rela-tive Phaeobacter caeruleus. The 4,642,596 bp long genome of strain TF-218T contains 4,310 protein-coding genes and 78 RNA genes including four rRNA operons and consists of five re-plicons: one chromosome and four extrachromosomal elements with sizes of 276 kb, 174 kb, 117 kb and 90 kb. Genome analysis showed that TF-218T possesses all of the genes for indigoidine biosynthesis, and on specific media the strain showed a blue pigmentation. We also found genes for dissimilatory nitrate reduction, gene-transfer agents, NRPS/ PKS genes and signaling systems homologous to the LuxR/I system.

AB - TF-218T is the type strain of the species Phaeobacter daeponensis Yoon et al. 2007, a facultatively anaerobic Phaeobacter species isolated from tidal flats. Here we describe the draft genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. We analyzed the genome for genes involved in secondary metabo-lite production and its anaerobic lifestyle, which have also been described for its closest rela-tive Phaeobacter caeruleus. The 4,642,596 bp long genome of strain TF-218T contains 4,310 protein-coding genes and 78 RNA genes including four rRNA operons and consists of five re-plicons: one chromosome and four extrachromosomal elements with sizes of 276 kb, 174 kb, 117 kb and 90 kb. Genome analysis showed that TF-218T possesses all of the genes for indigoidine biosynthesis, and on specific media the strain showed a blue pigmentation. We also found genes for dissimilatory nitrate reduction, gene-transfer agents, NRPS/ PKS genes and signaling systems homologous to the LuxR/I system.

KW - Facultative anaerobe

KW - Indigoidine

KW - Marine microbiology

KW - Rhodobacteraceae

KW - Roseobacter clade

UR - http://www.scopus.com/inward/record.url?scp=84887052328&partnerID=8YFLogxK

U2 - 10.4056/sigs.4287962

DO - 10.4056/sigs.4287962

M3 - Article

AN - SCOPUS:84887052328

VL - 9

SP - 142

EP - 159

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 1

ER -

ID: 36051960