DOI

  • Marco Dogs
  • Hazuki Teshima
  • Jörn Petersen
  • Anne Fiebig
  • Olga Chertkov
  • Hajnalka Dalingault
  • Amy Chen
  • Amrita Pati
  • Lynne A. Goodwin
  • Patrick Chain
  • John C. Detter
  • Manfred Rohde
  • Sabine Gronow
  • Nikos C. Kyrpides
  • Tanja Woyke
  • Meinhard Simon
  • Markus Göker
  • Hans Peter Klenk
  • Thorsten Brinkhoff

TF-218T is the type strain of the species Phaeobacter daeponensis Yoon et al. 2007, a facultatively anaerobic Phaeobacter species isolated from tidal flats. Here we describe the draft genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. We analyzed the genome for genes involved in secondary metabo-lite production and its anaerobic lifestyle, which have also been described for its closest rela-tive Phaeobacter caeruleus. The 4,642,596 bp long genome of strain TF-218T contains 4,310 protein-coding genes and 78 RNA genes including four rRNA operons and consists of five re-plicons: one chromosome and four extrachromosomal elements with sizes of 276 kb, 174 kb, 117 kb and 90 kb. Genome analysis showed that TF-218T possesses all of the genes for indigoidine biosynthesis, and on specific media the strain showed a blue pigmentation. We also found genes for dissimilatory nitrate reduction, gene-transfer agents, NRPS/ PKS genes and signaling systems homologous to the LuxR/I system.

Язык оригиналаанглийский
Страницы (с-по)142-159
Число страниц18
ЖурналStandards in Genomic Sciences
Том9
Номер выпуска1
DOI
СостояниеОпубликовано - 11 ноя 2013

    Предметные области Scopus

  • Генетика

ID: 36051960