elevance of work is caused the transition to a new technological method of production and the need for changes in control systems. The study considers methodological approaches to determining the priority directions of structural changes in the management system of innovative companies under the influence of digital technologies. A comprehensive analysis of the activities of Russian innovative companies allowed us to form priorities for optimizing the management system of innovative development of companies, which should take into account competitive positioning and scenarios for improving the efficiency of business structures, which should be aimed at achieving socio - economic effects at the regional level of management in Russia. In the course of a comprehensive study, 500 Russian innovative organizations were monitored. the analysis of their activities revealed the priority directions of elements of the transformation of the company's management system under the influence of digital technologies. The resu