Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

Montague, M. J., Li, G., Golfi, B., Khan, R., Aken, B. L., Searle, S. M. J., Minx, P., Hillier, L. W., Koboldt, D. C., Davis, B. W., Driscoll, C. A., Barr, C. S., Blackistone, K., Quilez, J., Lorente-Galdos, B., Marques-Bonet, T., Alkan, C., Thomas, G. W. C., Hahn, M. W., Menotti-Raymond, M. & 5 others, O'Brien, S. J., Wilson, R. K., Lyons, L. A., Murphy, W. J. & Warren, W. C., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 48, p. 17230-17235

Research output: Contribution to journal › Article

Comparative genomics reveals insights into avian genome evolution and adaptation

Correction Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 115 others, Hu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li, H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Fan, Y., Da Fonseca, R. R., Alfaro-N ñez, A., Schubert, M., Orlando, L., Mourier, T., Howard, J. T., Ganapathy, G., Pfenning, A., Whitney, O., Rivas, M. V., Hara, E., Smith, J., Farré, M., Narayan, J., Slavov, G., Romanov, M. N., Borges, R., Machado, J. P., Khan, I., Springer, M. S., Gatesy, J., Hoffmann, F. G., Opazo, J. C., H stad, O., Sawyer, R. H., Kim, H., Kim, K-W., Kim, H. J., Cho, S., Li, N., Huang, Y., Bruford, M. W., Zhan, X., Dixon, A., Bertelsen, M. F., Derryberry, E., Warren, W., Wilson, R. K., Li, S., Ray, D. A., Green, R. E., O'Brien, S. J., Griffin, D., Johnson, W. E., Haussler, D., Ryder, O. A., Willerslev, E., Graves, G. R., Alström, P., Fjelds, J., Mindell, D. P., Edwards, S. V., Braun, E. L., Rahbek, C., Burt, D. W., Houde, P., Zhang, Y., Yang, H., Jarvis, E. D., Gilbert, M. T. P., Ye, C., Liang, S., Yan, Z., Zepeda, M. L., Campos, P. F., Velazquez, A. M. V., Samaniego, J. A., Avila-Arcos, M., Martin, M. D., Barnett, R., Ribeiro, A. M., Mello, C. V., Lovell, P. V., Almeida, D., Maldonado, E., Pereira, J., Sunagar, K., Philip, S., Dominguez-Bello, M. G., Bunce, M., Lambert, D., Brumfield, R. T., Sheldon, F. H., Holmes, E. C., Gardner, P. P., Steeves, T. E., Stadler, P. F., Burge, S. W., Lyons, E., McCarthy, F., Pitel, F., Rhoads, D. & Froman, D. P., 2014, In: Science.. 6215, p. 1311-1320

Research output: Contribution to journal › Article › peer-review

Development of MHC-linked microsatellite markers in the domestic cat and their use to evaluate MHC diversity in domestic cats, cheetahs, and gir lions

Morris, K. M., Kirby, K., Beatty, J. A., Barrs, V. R., Cattley, S., David, V., O'Brien, S. J., Menotti-Raymond, M. & Belov, K., 2014, In: Journal of Heredity. 4, p. 493-505

Research output: Contribution to journal › Article

Endogenous retrovirus insertion in the KIT oncogene determines white and white spotting in domestic cats

David, V. A., Menotti-Raymond, M., Wallace, A. C., Roelke, M., Kehler, J., Leighty, R., Eizirik, E., Hannah, S. S., Nelson, G., Schäffer, A. A., Connelly, C. J., O'Brien, S. J. & Ryugo, D. K., 2014, In: G3 (Bethesda, Md.). 10, p. 1881-1891

Research output: Contribution to journal › Article

Evaluation and integration of genetic signature for prediction risk of nasopharyngeal carcinoma in Southern China

Guo, X., Winkler, C. A., Li, J., Guan, L., Tang, M., Liao, J., Deng, H., De Thé, G., Zeng, Y. & O'Brien, S. J., 2014, In: BioMed Research International.

Research output: Contribution to journal › Article › peer-review

Evolutionary genomics and adaptive evolution of the hedgehog gene family (Shh, Ihh and Dhh) in vertebrates

Pereira, J., Johnson, W. E., O'Brien, S. J., Jarvis, E. D., Zhang, G., Gilbert, M. T. P., Vasconcelos, V. & Antunes, A., 2014, In: PLoS ONE. 12

Research output: Contribution to journal › Article

Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from southern China

Liang, Y., Tang, W., Huang, T., Gao, Y., Tan, A., Yang, X., Zhang, H., Hu, Y., Qin, X., Li, S., Zhang, S., Mo, L., Liang, Z., Shi, D., Huang, Z., Guan, Y., Zhou, J., Winkler, C., O'Brien, S. J., Xu, J. & 2 others, Mo, Z. & Peng, T., 2014, In: PLoS ONE. 6

Research output: Contribution to journal › Article

Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology

Chernyaeva, E. N., Shulgina, M. V., Rotkevich, M. S., Dobrynin, P. V., Simonov, S. A., Shitikov, E. A., Ischenko, D. S., Karpova, I. Y., Kostryukova, E. S., Ilina, E. N., Govorun, V. M., Zhuravlev, V. Y., Manicheva, O. A., Yablonsky, P. K., Isaeva, Y. D., Nosova, E. Y., Mokrousov, I. V., Vyazovaya, A. A., Narvskaya, O. V., Lapidus, A. L. & 1 others, O'Brien, S. J., 2014, In: BMC Genomics. 15, 308, p. 1-8

Research output: Contribution to journal › Article

GWATCH: a web platform for automated gene association discovery analysis

Svitin, A., Malov, S., Cherkasov, N., Geerts, P., Rotkevich, M., Dobrynin, P., Shevchenko, A., Guan, L., Troyer, J., Hendrickson, S., Dilks, H. H., Oleksyk, T. K., Donfield, S., Gomperts, E., Jabs, D. A., Sezgin, E., Van Natta, M., Harrigan, P. R., Brumme, Z. L. & O'Brien, S. J., 2014, In: GigaScience. 3, 3, 10 p., 18.

Research output: Contribution to journal › Article › peer-review

Mammalian keratin associated proteins (KRTAPs) subgenomes: Disentangling hair diversity and adaptation to terrestrial and aquatic environments

Khan, I., Maldonado, E., Vasconcelos, V., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2014, In: BMC Genomics. 1

Research output: Contribution to journal › Article