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  1. 2019

  2. Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

    Farré, M., Kim, J., Proskuryakova, A. A., Zhang, Y., Kulemzina, A. I., Li, Q., Zhou, Y., Xiong, Y., Johnson, J. L., Perelman, P. L., Johnson, W. E., Warren, W. C., Kukekova, A. V., Zhang, G., O’Brien, S. J., Ryder, O. A., Graphodatsky, A. S., Ma, J., Lewin, H. A. & Larkin, D. M., Apr 2019, In: Genome Research. 29, 4, p. 576-589 14 p.

    Research output: Contribution to journal › Article › peer-review

  3. White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability

    Marra, N. J., Stanhope, M. J., Jue, N. K., Wang, M., Sun, Q., Bitar, P. P., Richards, V. P., Komissarov, A., Rayko, M., Kliver, S., Stanhope, B. J., Winkler, C., O’Brien, S. J., Antunes, A., Jorgensen, S. & Shivji, M. S., 5 Mar 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 10, p. 4446-4455 10 p.

    Research output: Contribution to journal › Article › peer-review

  4. Integrated analysis of competing endogenous RNA network revealing potential prognostic biomarkers of hepatocellular carcinoma

    Liao, X., Wang, X., Huang, K., Han, C., Deng, J., Yu, T., Yang, C., Huang, R., Liu, X., Yu, L., Zhu, G., Su, H., Qin, W., Zeng, X., Han, B., Han, Q., Liu, Z., Zhou, X., Gong, Y., Liu, Z. & 5 others, Huang, J., Winkler, C. A., O'Brien, S. J., Ye, X. & Peng, T., 1 Jan 2019, In: Journal of Cancer. 10, 14, p. 3267-3283 17 p.

    Research output: Contribution to journal › Article › peer-review

  5. halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments

    Krasheninnikova, K., Diekhans, M., Armstrong, J., Dievskii, A., Paten, B. & O'Brien, S., 2019, In: Bioinformatics.

    Research output: Contribution to journal › Article › peer-review

  6. THE GENOME RUSSIA PROJECT-2019.

    Obrien, S. J., Zhernakova, D. V., Brukhin, V., Malov, S., Oleksyk, T. K., Dobrynin, P., Kliver, S., Cherkasov, N., Tamazian, G., Krasheninnikova, K., Evsyukov, I., Sidorov, S., Gorbunova, A., Chernyaeva, E., Shevchenko, A., Komissarov, A., Simonov, S., Antonik, A., Logachev, A., Polev, D. E. & 6 others, Glotov, A. S., Sivtseva, T. M., Balanovsky, O., Osakovsky, V., Novozhilov, A. & Puzyrev, V., 2019, p. 89.

    Research output: Contribution to conference › Abstract

  7. 2018

  8. Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis

    Zhernakova, D., Kliver, S., Cherkasov, N., Tamazian, G., Rotkevich, M., Krasheninnikova, K., Evsyukov, I., Sidorov, S., Dobrynin, P., Yurchenko, A. A., Shimansky, V., Shcherbakova, I. V., Glotov, A. S., Valle, D. L., Tang, M., Shin, E., Schwarz, K. B. & O'Brien, S. J., 11 Jul 2018, In: PLoS ONE. 13, 7, p. e0200423 18 p., e0200423.

    Research output: Contribution to journal › Article › peer-review

  9. Life Table Estimator Revisited

    Малов, С. В. & О Брайен, С. Д., 3 May 2018, In: Communications in Statistics - Theory and Methods. 47, 9, p. 2126-2133 8 p.

    Research output: Contribution to journal › Article › peer-review

  10. New high copy tandem repeat in the content of the chicken W chromosome

    Komissarov, A. S., Galkina, S. A., Koshel, E. I., Kulak, M. M., Dyomin, A. G., O’Brien, S. J., Gaginskaya, E. R. & Saifitdinova, A. F., 1 Mar 2018, In: Chromosoma. 127, 1, p. 73-83 11 p.

    Research output: Contribution to journal › Article › peer-review

  11. Whole-genome analysis of mycobacterium tuberculosis from patients with tuberculous spondylitis, Russia

    Chernyaeva, E., Rotkevich, M., Krasheninnikova, K., Yurchenko, A., Vyazovaya, A., Mokrousov, I., Solovieva, N., Zhuravlev, V., Yablonsky, P. & O’Brien, S. J., 1 Mar 2018, In: Emerging Infectious Diseases. 24, 3, p. 579-583 5 p.

    Research output: Contribution to journal › Article › peer-review

  12. Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

    Borges, R., Johnson, W. E., O'Brien, S. J., Gomes, C., Heesy, C. P. & Antunes, A., 5 Feb 2018, In: BMC Genomics. 19, 1, 12 p., 121.

    Research output: Contribution to journal › Article › peer-review

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