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  1. 2014

  2. Whole-genome analyses resolve early branches in the tree of life of modern birds

    Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Da Fonseca, R. R., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, Boussau, B., Bayzid, M. S., Zavidovych, V., Subramanian, S., Gabaldón, T., Capella-Gutiérrez, S., Huerta-Cepas, J., Rekepalli, B., Munch, K., Schierup, M., Lindow, B., Warren, W. C., Ray, D., Green, R. E., Bruford, M. W., Zhan, X., Dixon, A., Li, S., Li, N., Huang, Y., Derryberry, E. P., Bertelsen, M. F., Sheldon, F. H., Brumfield, R. T., Mello, C. V., Lovell, P. V., Wirthlin, M., Schneider, M. P. C., Prosdocimi, F., Samaniego, J. A., Velazquez, A. M. V., Alfaro-N ñez, A., Campos, P. F., Petersen, B., Sicheritz-Ponten, T., Pas, A., Bailey, T., Scofield, P., Bunce, M., Lambert, D. M., Zhou, Q., Perelman, P., Driskell, A. C., Shapiro, B., Xiong, Z., Zeng, Y., Liu, S., Li, Z., Liu, B., Wu, K., Xiao, J., Yinqi, X., Zheng, Q., Zhang, Y., Yang, H., Wang, J., Smeds, L., Rheindt, F. E., Braun, M., Fjeldsa, J., Orlando, L., Barker, F. K., J nsson, K. A., Johnson, W., Koepfli, K-P., O'Brien, S., Haussler, D., Ryder, O. A., Rahbek, C., Willerslev, E., Graves, G. R., Glenn, T. C., McCormack, J., Burt, D., Ellegren, H., Alström, P., Edwards, S. V., Stamatakis, A., Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Jun, W., Gilbert, M. T. P. & Zhang, G., 2014, In: Science.. 6215, p. 1320-1331

    Research output: Contribution to journal › Article › peer-review

  3. Whole genome sequence of the cellulose-synthesizing bacteria Gluconacetobacter rhaeticus and evaluation of the four bacterial genome assemblers

    Rayko, M., Chernyaeva, E., Tkachenko, A. & O’Brien., S. J., 2014, Proceedings of Next Generation Sequencing Conference (NGS) 2014.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  4. Whole genome sequencing of Mycobacterium tuberculosis strains obtained from patients with pulmonary and extrapulmonary tuberculosis

    Chernyaeva, E., Rotkevich, M., Solovieva, N., Zhuravlev, V., Lapidus, A. & O'Brien, S., 2014, The International Journal of Tuberculosis and Lung Disease. S156

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  5. 2013

  6. A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

    Bartha, I., Carlson, J. M., Brumme, C. J., McLaren, P. J., Brumme, Z. L., John, M., Haas, D. W., Martinez-Picado, J., Dalmau, J., López-Gal ndez, C., Casado, C., Rauch, A., Günthard, H. F., Bernasconi, E., Vernazza, P., Klimkait, T., Yerly, S., O'Brien, S. J., Listgarten, J., Pfeifer, N. & 9 others, Lippert, C., Fusi, N., Kutalik, Z., Allen, T. M., Müller, V., Richard Harrigan, P., Heckerman, D., Telenti, A. & Fellay, J., 2013, In: eLife. 2, p. e01123

    Research output: Contribution to journal › Article

  7. Association Study of Common Genetic Variants and HIV-1 Acquisition in 6,300 Infected Cases and 7,200 Controls

    McLaren, P. J., Coulonges, C., Ripke, S., van den Berg, L., Buchbinder, S., Carrington, M., Cossarizza, A., Dalmau, J., Deeks, S. G., Delaneau, O., De Luca, A., Goedert, J. J., Haas, D., Herbeck, J. T., Kathiresan, S., Kirk, G. D., Lambotte, O., Luo, M., Mallal, S., van Manen, D. & 25 others, Martinez-Picado, J., Meyer, L., Mullins, J. I., Obel, N., O'Brien, S. J., Pereyra, F., Plummer, F. A., Poli, G., Qi, Y., Rucart, P., Sandhu, M. S., Shea, P. R., Schuitemaker, H., Theodorou, I., Vannberg, F., Veldink, J., Walker, B. D., Weintrob, A., Winkler, C. A., Wolinsky, S., Telenti, A., Goldstein, D. B., de Bakker, P. I. W., Zagury, J-F. & Fellay, J., 2013, In: PLoS Pathogens. 7

    Research output: Contribution to journal › Article

  8. Evolution: A new cat species emerges

    O'Brien, S. J. & Koepfli, K-P., 2013, In: Current Biology. 24, p. R1103-R1105

    Research output: Contribution to journal › Article

  9. Host Genomic Influences on HIV/AIDS

    O’Brien, SJ. & Hendrickson, S., 2013, In: Genome Biology. 14, 1, p. 1-13

    Research output: Contribution to journal › Article

  10. Molecular evidence for a recent demographic expansion in the puma (Puma concolor) (Mammalia, Felidae)

    Matte, E. M., Castilho, C. S., Miotto, R. A., Sana, D. A., Johnson, W. E., O'Brien, S. J., de Freitas, T. R. O. & Eizirik, E., 2013, In: Genetics and Molecular Biology. 4, p. 586-597

    Research output: Contribution to journal › Article

  11. On Survival Categorical Methods with Applications in Epidemiology and AIDS Research

    Malov, S. V. & O'Brien, S. J., 2013, Applied Methods of Statistical Analysis. Applications in Survival Analysis, Reliability and Quality Control. - AMSA 2013, Novosibirsk, Russia, 25-27 September, 2013: Proceedings of the International Workshop.. Новосибирский государственный технический университет, p. 173-180

    Research output: Chapter in Book/Report/Conference proceeding › Article in an anthology

  12. The "exotic aliens" controversy: A view from afar

    O'Brien, S. J., 2013, In: Journal of the Bombay Natural History Society. 2, p. 108-113

    Research output: Contribution to journal › Literature review

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