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  1. Accurate isoform discovery with IsoQuant using long reads

    Prjibelski, A. D., Lapidus, A. L., Joglekar, A., Smetanin, A., Mikheenko, A., Jarroux, J. & Tilgner, H. U., Jul 2023, In: Nature Biotechnology. 41, 7, p. 915-918 4 p.

    Research output: Contribution to journal › Article › peer-review

  2. Assembly Graph Browser: interactive visualization of assembly graphs

    Mikheenko, A. & Kolmogorov, M., 15 Sep 2019, In: Bioinformatics. 35, 18, p. 3476-3478 3 p.

    Research output: Contribution to journal › Article › peer-review

  3. Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

    Mc Cartney, A. M., Shafin, K., Alonge, M., Bzikadze, A. V., Formenti, G., Fungtammasan, A., Howe, K., Jain, C., Koren, S., Logsdon, G. A., Miga, K. H., Mikheenko, A., Paten, B., Shumate, A., Soto, D. C., Sović, I., Wood, J. M. D., Zook, J. M., Phillippy, A. M. & Rhie, A., Jun 2022, In: Nature Methods. 19, 6, p. 687-695 9 p.

    Research output: Contribution to journal › Article › peer-review

  4. Complete genomic and epigenetic maps of human centromeres

    T2T consortium, 1 Apr 2022, In: Science. 376, 6588, eabl4178.

    Research output: Contribution to journal › Article › peer-review

  5. Dereplication of microbial metabolites through database search of mass spectra

    Mohimani, H., Гуревич, А. А., Шлемов, А. Ю., Михеенко, А. А., Коробейников, А. И., Cao, L., Щербин, Е., Nothias, L-F., Dorrestein, P. C. & Певзнер, П. А., 1 Dec 2018, In: Nature Communications. 9, 1, 12 p., 4035.

    Research output: Contribution to journal › Article › peer-review

  6. Dereplication of peptidic natural products through database search of mass spectra

    Mohimani, H., Gurevich, A., Mikheenko, A., Garg, N., Nothias, L. F., Ninomiya, A., Takada, K., Dorrestein, P. C. & Pevzner, P. A., 1 Jan 2017, In: Nature Chemical Biology. 13, 1, p. 30-37 8 p.

    Research output: Contribution to journal › Article › peer-review

  7. Extending rnaSPAdes functionality for hybrid transcriptome assembly

    Prjibelski, A., Bushmanova, E., Giordano, D., Mikheenko, A., Puglia, G., Antipov, D., Viatale, D. & Lapidus, A., 8 Nov 2019, In: BMC Bioinformatics. 20, S17, 2 p., O9.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  8. Extending rnaSPAdes functionality for hybrid transcriptome assembly

    Prjibelski, A. D., Puglia, G. D., Antipov, D., Bushmanova, E., Giordano, D., Mikheenko, A., Vitale, D. & Lapidus, A., 24 Jul 2020, In: BMC Bioinformatics. 21, Suppl 12, p. 302 9 p., 302.

    Research output: Contribution to journal › Article › peer-review

  9. Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

    Bzikadze, A., Mikheenko, A. & Певзнер, П. А., 15 Nov 2022, (E-pub ahead of print) In: Genome Research.

    Research output: Contribution to journal › Article › peer-review

  10. Icarus: Visualizer for de novo assembly evaluation

    Mikheenko, A., Valin, G., Prjibelski, A., Saveliev, V. & Gurevich, A., 1 Nov 2016, In: Bioinformatics. 32, 21, p. 3321-3323 3 p.

    Research output: Contribution to journal › Article › peer-review

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