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  1. 2020

  2. metaFlye: scalable long-read metagenome assembly using repeat graphs

    Kolmogorov, M., Bickhart, D. M., Behsaz, B., Гуревич, А. А., Райко, М. П., Shin, S. B., Kuhn, K., Yuan, J., Polevikov, E., Smith, T. P. L. & Певзнер, П. А., 1 Nov 2020, In: Nature Methods. 17, 11, p. 1103-1110 8 p.

    Research output: Contribution to journal › Article › peer-review

  3. Draft genome of Bugula neritina, a colonial animal packing powerful symbionts and potential medicines

    Райко, М. П., 20 Oct 2020, In: Nature Scientific Data. 7, 1, 5 p., 356.

    Research output: Contribution to journal › Article › peer-review

  4. Highly Productive Boreal Ecosystem Chernevaya Taiga - Unique Rainforest in Siberia

    Абакумов, Е. В., Loiko, S., Lashchinsky, N., Istigechev, G., Кулемзина, А., Смирнов, А. В., Райко, М. П. & Лапидус, А. Л., 16 Sep 2020, (E-pub ahead of print).

    Research output: Working paper › Discussion paper

  5. Feature-based molecular networking in the GNPS analysis environment

    Nothias, L. F., Petras, D., Schmid, R., Dührkop, K., Rainer, J., Sarvepalli, A., Protsyuk, I., Ernst, M., Tsugawa, H., Fleischauer, M., Aicheler, F., Aksenov, A. A., Alka, O., Allard, P. M., Barsch, A., Cachet, X., Caraballo-Rodriguez, A. M., Da Silva, R. R., Dang, T., Garg, N. & 30 others, Gauglitz, J. M., Gurevich, A., Isaac, G., Jarmusch, A. K., Kameník, Z., Kang, K. B., Kessler, N., Koester, I., Korf, A., Le Gouellec, A., Ludwig, M., Martin H, C., McCall, L. I., McSayles, J., Meyer, S. W., Mohimani, H., Morsy, M., Moyne, O., Neumann, S., Neuweger, H., Nguyen, N. H., Nothias-Esposito, M., Paolini, J., Phelan, V. V., Pluskal, T., Quinn, R. A., Rogers, S., Shrestha, B., Tripathi, A. & van der Hooft, J. J. J., Sep 2020, In: Nature Methods. 17, 9, p. 905-908 4 p.

    Research output: Contribution to journal › Article › peer-review

  6. Seed transcriptome annotation reveals enhanced expression of genes related to ros homeostasis and ethylene metabolism at alternating temperatures in wild cardoon

    Huarte, H. R., Puglia, G. D., Prjibelski, A. D. & Raccuia, S. A., Sep 2020, In: Plants. 9, 9, p. 1-19 19 p., 1225.

    Research output: Contribution to journal › Article › peer-review

  7. Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.)

    Puglia, G. D., Prjibelski, A. D., Vitale, D., Bushmanova, E., Schmid, K. J. & Raccuia, S. A., 21 Aug 2020, In: BMC Genomics. 21, 1, 17 p., 317.

    Research output: Contribution to journal › Article › peer-review

  8. Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

    Kondratenko, Y., Korobeynikov, A. & Lapidus, A., 19 Aug 2020, In: BMC Bioinformatics. 21, 1, 1 p., 362.

    Research output: Contribution to journal › Comment/debate › peer-review

  9. CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

    Kondratenko, Y., Korobeynikov, A. & Lapidus, A., 24 Jul 2020, In: BMC Bioinformatics. 21, 303.

    Research output: Contribution to journal › Article › peer-review

  10. Extending rnaSPAdes functionality for hybrid transcriptome assembly

    Prjibelski, A. D., Puglia, G. D., Antipov, D., Bushmanova, E., Giordano, D., Mikheenko, A., Vitale, D. & Lapidus, A., 24 Jul 2020, In: BMC Bioinformatics. 21, Suppl 12, p. 302 9 p., 302.

    Research output: Contribution to journal › Article › peer-review

  11. SPAligner: Alignment of long diverged molecular sequences to assembly graphs

    Dvorkina, T., Antipov, D., Korobeynikov, A. & Nurk, S., 24 Jul 2020, In: BMC Bioinformatics. 21, Suppl 12, 306.

    Research output: Contribution to journal › Article › peer-review

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