Automated annotation of human centromeres with HORmon

Kunyavskaya, O., Dvorkina, T., Bzikadze, A. V., Alexandrov, I. A. & Pevzner, P. A., 1 Jun 2022, In: Genome Research. 32, 6, p. 1137-1151 15 p.

Research output: Contribution to journal › Article › peer-review

Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

Mc Cartney, A. M., Shafin, K., Alonge, M., Bzikadze, A. V., Formenti, G., Fungtammasan, A., Howe, K., Jain, C., Koren, S., Logsdon, G. A., Miga, K. H., Mikheenko, A., Paten, B., Shumate, A., Soto, D. C., Sović, I., Wood, J. M. D., Zook, J. M., Phillippy, A. M. & Rhie, A., Jun 2022, In: Nature Methods. 19, 6, p. 687-695 9 p.

Research output: Contribution to journal › Article › peer-review

Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities

Bickhart, D. M., Kolmogorov, M., Tseng, E., Portik, D. M., Коробейников, А. И., Толстоганов, И. Н., Uritskiy, G., Liachko, I., Sullivan, S. T., Shin, S. B., Zorea, A., Andreu, V. P., Panke-Buisse, K., Medema, M. H., Mizrahi, I., Певзнер, П. А. & Smith, T. P. L., May 2022, In: Nature Biotechnology. 40, 5, p. 711-719 9 p.

Research output: Contribution to journal › Article › peer-review

IsoQuant: a tool for accurate novel isoform discovery with long reads

Prjibelski, A., Mikheenko, A., Joglekar, A., Smetanin, A., Jarroux, J., Lapidus, A. & Tilgner, H. U., 26 Apr 2022, (E-pub ahead of print) In: Nature Biotechnology.

Research output: Contribution to journal › Article › peer-review

Critical Assessment of Metagenome Interpretation: the second round of challenges

Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, L. H., Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, J., Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, S., Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, S. J., Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 8 Apr 2022, In: Nature Methods. 19, 4, p. 429-440 12 p.

Research output: Contribution to journal › Article › peer-review

Complete genomic and epigenetic maps of human centromeres

T2T consortium, 1 Apr 2022, In: Science. 376, 6588, eabl4178.

Research output: Contribution to journal › Article › peer-review

Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns

Mikheenko, A., Prjibelski, A. D., Joglekar, A. & Tilgner, H. U., 1 Apr 2022, In: Genome Research. 32, 4, p. 726-737 12 p.

Research output: Contribution to journal › Article › peer-review

Hi-C Metagenomics in the ICU: Exploring Clinically Relevant Features of Gut Microbiome in Chronically Critically Ill Patients

Ivanova, V., Chernevskaya, E., Vasiluev, P., Ivanov, A., Tolstoganov, I., Шафранская, Д. Д., Ulyantsev, V., Korobeynikov, A., Razin, S. V., Beloborodova, N., Ulianov, S. V. & Tyakht, A., 3 Feb 2022, In: Frontiers in Microbiology. 12, 17 p., 770323.

Research output: Contribution to journal › Article › peer-review

Petabase-scale sequence alignment catalyses viral discovery

Edgar, R. C., Taylor, J., Lin, V., Altman, T., Barbera, P., Meleshko, D., Lohr, D., Novakovsky, G., Buchfink, B., Al-Shayeb, B., Banfield, J. F., de la Peña, M., Korobeynikov, A., Chikhi, R. & Babaian, A., 3 Feb 2022, In: Nature. 602, 7895, p. 142-147 6 p.

Research output: Contribution to journal › Article › peer-review