Fungal metagenome of chernevaya taiga soils: Taxonomic composition, differential abundance and factors related to plant gigantism

Rayko, M., Sokornova, S. & Lapidus, A., Nov 2021, In: Journal of Fungi. 7, 11, 12 p., 908.

Research output: Contribution to journal › Article › peer-review

Nerpa: A tool for discovering biosynthetic gene clusters of bacterial nonribosomal peptides

Kunyavskaya, O., Tagirdzhanov, A. M., Caraballo-Rodríguez, A. M., Nothias, L. F., Dorrestein, P. C., Korobeynikov, A., Mohimani, H. & Gurevich, A., 11 Oct 2021, In: Metabolites. 11, 10, 20 p., 693.

Research output: Contribution to journal › Article › peer-review

Graph-Based Approaches Significantly Improve the Recovery of Antibiotic Resistance Genes From Complex Metagenomic Datasets

Шафранская, Д. Д., Chori, A. & Korobeynikov, A., 6 Oct 2021, In: Frontiers in Microbiology. 12, 7 p., 714836.

Research output: Contribution to journal › Article › peer-review

coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies

Meleshko, D., Hajirasouliha, I. & Korobeynikov, A., Oct 2021, In: Bioinformatics. btab597.

Research output: Contribution to journal › Article › peer-review

Quantification reveals early dynamics in Drosophila maternal gradients

Shlemov, A., Alexandrov, T., Golyandina, N., Holloway, D., Baumgartner, S. & Spirov, A. V., 19 Aug 2021, In: PLoS ONE. 16, 8, 31 p., e0244701.

Research output: Contribution to journal › Article › peer-review

Pattern of taar5 expression in the human brain based on transcriptome datasets analysis

Vaganova, A. N., Murtazina, R. Z., Shemyakova, T. S., Prjibelski, A. D., Katolikova, N. V. & Gainetdinov, R. R., 16 Aug 2021, In: International Journal of Molecular Sciences. 22, 16, 18 p., 8802.

Research output: Contribution to journal › Article › peer-review

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Brooks, A., Pardo-Palacios, F., Reese, F., Carbonell-Sala, S., Diekhans, M., Liang, C., Wang, D., Williams, B., Adams, M., Behera, A., Lagarde, J., Li, H., Пржибельский, А., Balderrama-Gutierrez, G., Çelik, M. H., María, M. D., Denslow, N., Garcia-Reyero, N., Goetz, S., Hunter, M. & 17 others, Loveland, J., Menor, C., Moraga, D., Mudge, J., Takahashi, H., Tang, A., Youngworth, I., Carninci, P., Guigó, R., Tilgner, H. U., Wold, B., Vollmers, C., Sheynkman, G., Frankish, A., Au, K. F., Conesa, A. & Mortazavi, A., 3 Aug 2021, (Submitted) In: Nature Methods.

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CentromereArchitect: Inference and analysis of the architecture of centromeres

Dvorkina, T., Kunyavskaya, O., Bzikadze, A. V., Alexandrov, I. & Pevzner, P. A., 1 Jul 2021, In: Bioinformatics. 37, p. 196-204 9 p.

Research output: Contribution to journal › Article › peer-review

MolDiscovery: learning mass spectrometry fragmentation of small molecules

Cao, L., Guler, M., Tagirdzhanov, A., Lee, Y. Y., Gurevich, A. & Mohimani, H., 17 Jun 2021, In: Nature Communications. 12, 1, 13 p., 3718.

Research output: Contribution to journal › Article › peer-review

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery

Behsaz, B., Bode, E., Gurevich, A., Shi, Y. N., Grundmann, F., Acharya, D., Caraballo-Rodríguez, A. M., Bouslimani, A., Panitchpakdi, M., Linck, A., Guan, C., Oh, J., Dorrestein, P. C., Bode, H. B., Pevzner, P. A. & Mohimani, H., 28 May 2021, In: Nature Communications. 12, 1, 17 p., 3225.

Research output: Contribution to journal › Article › peer-review