We retrieve ionization rates in the atmosphere caused by energetic electron precipitation from balloon observations in the polar atmosphere and compare them against ionization rates recommended for the Phase 6 of the Coupled Model Intercomparison Project. In our retrieval procedure, we consider the precipitating electrons with energies from about tens of keV to 5 MeV. Our simulations with 1-D radiative-convective model with interactive neutral and ion chemistry show that the difference of the Phase 6 of the Coupled Model Intercomparison Project and balloon-based ionization rate can lead to underestimation of the NO_x enhancement by more than 100% and ozone loss up to 25% in the mesosphere. The atmospheric response is different below 50 km due to considering highly energetic electrons, but it is not important because the absolute values of atmospheric impact is tiny. Ionization rates obtained from the balloon observations reveal a high variability.