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Fast and accurate mapping of long reads to complete genome assemblies with VerityMap. / Bzikadze, Andrey; Mikheenko, Alla ; Певзнер, Павел Аркадьевич.

In: Genome Research, 15.11.2022.

Research output: Contribution to journal › Article › peer-review

Harvard

Bzikadze, A, Mikheenko, A & Певзнер, ПА 2022, 'Fast and accurate mapping of long reads to complete genome assemblies with VerityMap', Genome Research. https://doi.org/10.1101/gr.276871.122

APA

Bzikadze, A., Mikheenko, A., & Певзнер, П. А. (2022). Fast and accurate mapping of long reads to complete genome assemblies with VerityMap. Genome Research. https://doi.org/10.1101/gr.276871.122

Vancouver

Bzikadze A, Mikheenko A, Певзнер ПА. Fast and accurate mapping of long reads to complete genome assemblies with VerityMap. Genome Research. 2022 Nov 15. https://doi.org/10.1101/gr.276871.122

Author

Bzikadze, Andrey ; Mikheenko, Alla ; Певзнер, Павел Аркадьевич. / Fast and accurate mapping of long reads to complete genome assemblies with VerityMap. In: Genome Research. 2022.

BibTeX

@article{aae01b61357a4988a025d19a05c76caf,
title = "Fast and accurate mapping of long reads to complete genome assemblies with VerityMap",
abstract = "Recent advancements in long-read sequencing have enabled the telomere-to-telomere (complete) assembly of a human genome and are now contributing to the haplotype-resolved complete assemblies of multiple human genomes. Since the accuracy of read mapping tools deteriorates in highly-repetitive regions, there is a need to develop accurate, error-exposing (detecting potential assembly errors), and diploid-aware (distinguishing different haplotypes) tools for read mapping in complete assemblies. We describe the first accurate, error-exposing, and partially diploid-aware VerityMap tool for long-read mapping to complete assemblies.",
author = "Andrey Bzikadze and Alla Mikheenko and Певзнер, {Павел Аркадьевич}",
year = "2022",
month = nov,
day = "15",
doi = "10.1101/gr.276871.122",
language = "English",
journal = "Genome Research",
issn = "1088-9051",
publisher = "Cold Spring Harbor Laboratory ",

}

RIS

TY - JOUR

T1 - Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

AU - Bzikadze, Andrey

AU - Mikheenko, Alla

AU - Певзнер, Павел Аркадьевич

PY - 2022/11/15

Y1 - 2022/11/15

N2 - Recent advancements in long-read sequencing have enabled the telomere-to-telomere (complete) assembly of a human genome and are now contributing to the haplotype-resolved complete assemblies of multiple human genomes. Since the accuracy of read mapping tools deteriorates in highly-repetitive regions, there is a need to develop accurate, error-exposing (detecting potential assembly errors), and diploid-aware (distinguishing different haplotypes) tools for read mapping in complete assemblies. We describe the first accurate, error-exposing, and partially diploid-aware VerityMap tool for long-read mapping to complete assemblies.

AB - Recent advancements in long-read sequencing have enabled the telomere-to-telomere (complete) assembly of a human genome and are now contributing to the haplotype-resolved complete assemblies of multiple human genomes. Since the accuracy of read mapping tools deteriorates in highly-repetitive regions, there is a need to develop accurate, error-exposing (detecting potential assembly errors), and diploid-aware (distinguishing different haplotypes) tools for read mapping in complete assemblies. We describe the first accurate, error-exposing, and partially diploid-aware VerityMap tool for long-read mapping to complete assemblies.

U2 - 10.1101/gr.276871.122

DO - 10.1101/gr.276871.122

M3 - Article

JO - Genome Research

JF - Genome Research

SN - 1088-9051

ER -

ID: 100330740