1. 2023
  2. Benchmarking state-of-the-art approaches for norovirus genome assembly in metagenome sample

    Мелешко, Д. А. & Коробейников, А. И., 29 Jul 2023, In: Biology. 12, 8, 1066.

    Research output: Contribution to journalArticlepeer-review

  3. 2022
  4. Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, L. H., Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, J., Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, S., Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, S. J., Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 8 Apr 2022, In: Nature Methods. 19, 4, p. 429-440 12 p.

    Research output: Contribution to journalArticlepeer-review

  5. Petabase-scale sequence alignment catalyses viral discovery

    Edgar, R. C., Taylor, J., Lin, V., Altman, T., Barbera, P., Meleshko, D., Lohr, D., Novakovsky, G., Buchfink, B., Al-Shayeb, B., Banfield, J. F., de la Peña, M., Korobeynikov, A., Chikhi, R. & Babaian, A., 3 Feb 2022, In: Nature. 602, 7895, p. 142-147 6 p.

    Research output: Contribution to journalArticlepeer-review

  6. 2021
  7. coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies

    Meleshko, D., Hajirasouliha, I. & Korobeynikov, A., Oct 2021, In: Bioinformatics. btab597.

    Research output: Contribution to journalArticlepeer-review

  8. 2020
  9. Using SPAdes De Novo Assembler

    Prjibelski, A., Antipov, D., Meleshko, D., Lapidus, A. & Korobeynikov, A., 19 Jun 2020, In: Current Protocols in Bioinformatics. 70, 1, e102.

    Research output: Contribution to journalArticlepeer-review

  10. Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

    MetaSUB Consortium, Jun 2020, In: Nature Medicine. 26, 6, p. 941-951 11 p.

    Research output: Contribution to journalArticlepeer-review

  11. 2019
  12. BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

    Meleshko, D., Mohimani, H., Tracanna, V., Hajirasouliha, I., Medema, M. H., Korobeynikov, A. & Pevzner, P. A., 1 Aug 2019, In: Genome Research. 29, 8, p. 1352-1362 11 p.

    Research output: Contribution to journalArticlepeer-review

  13. Minerva: An alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics

    Danko, D. C., Meleshko, D., Bezdan, D., Mason, C. & Hajirasouliha, I., Jan 2019, In: Genome Research. 29, 1, p. 116-124 9 p.

    Research output: Contribution to journalArticlepeer-review

  14. 2018
  15. American Gut: an Open Platform for Citizen Science Microbiome Research

    Amer Gut Consortium, 2018, In: mSystems. 3, 3, 28 p., ARTN e00031-18.

    Research output: Contribution to journalArticlepeer-review

  16. 2017
  17. MetaSPAdes: A new versatile metagenomic assembler

    Nurk, S., Мелешко, Д. А., Korobeynikov, A. & Pevzner, P. A., 1 May 2017, In: Genome Research. 27, 5, p. 824-834 11 p.

    Research output: Contribution to journalArticlepeer-review

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