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  1. 2023

  2. Intelligent Identification of Trend Components in Singular Spectrum Analysis

    Golyandina, N., Dudnik, P. & Shlemov, A., 24 Jul 2023, In: Algorithms. 16, 7, 353.

    Research output: Contribution to journal › Article › peer-review

  3. 2021

  4. Quantification reveals early dynamics in Drosophila maternal gradients

    Shlemov, A., Alexandrov, T., Golyandina, N., Holloway, D., Baumgartner, S. & Spirov, A. V., 19 Aug 2021, In: PLoS ONE. 16, 8, 31 p., e0244701.

    Research output: Contribution to journal › Article › peer-review

  5. 2020

  6. MGnify: the microbiome analysis resource in 2020

    Mitchell, A. L., Almeida, A., Beracochea, M., Boland, M., Burgin, J., Cochrane, G., Crusoe, M. R., Kale, V., Potter, S. C., Richardson, L. J., Sakharova, E., Scheremetjew, M., Korobeynikov, A., Shlemov, A., Kunyavskaya, O., Lapidus, A. & Finn, R. D., 1 Jan 2020, In: Nucleic Acids Research. 48, D1, p. D570-D578 9 p.

    Research output: Contribution to journal › Article › peer-review

  7. 2019

  8. MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

    Cao, L., Gurevich, A., Alexander, K. L., Naman, C. B., Leão, T., Glukhov, E., Luzzatto-Knaan, T., Vargas, F., Quinn, R., Bouslimani, A., Nothias, L. F., Singh, N. K., Sanders, J. G., Benitez, R. A. S., Thompson, L. R., Hamid, M. N., Morton, J. T., Mikheenko, A., Shlemov, A., Korobeynikov, A. & 8 others, Friedberg, I., Knight, R., Venkateswaran, K., Gerwick, W. H., Gerwick, L., Dorrestein, P. C., Pevzner, P. A. & Mohimani, H., 18 Dec 2019, In: Cell Systems. 9, 6, p. 600-608.e4 13 p.

    Research output: Contribution to journal › Article › peer-review

  9. PathRacer: racing profile HMM paths on assembly graph

    Shlemov, A. & Korobeynikov, A., 8 Nov 2019, In: BMC Bioinformatics. 20, Suppl 17, 1 p., О10.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  10. NPS: scoring and evaluating the statistical significance of peptidic natural product–spectrum matches

    Tagirdzhanov, A. M., Shlemov, A. & Gurevich, A., 15 Jul 2019, In: Bioinformatics. 35, 14, p. I315-I323 9 p., btz374.

    Research output: Contribution to journal › Article › peer-review

  11. PathRacer: Racing Profile HMM Paths on Assembly Graph

    Shlemov, A. & Korobeynikov, A., 25 May 2019, 6th International Conference on Algorithms for Computational Biology. Martín-Vide, C., Vega-Rodríguez, M. A. & Holmes, I. (eds.). Springer Nature, p. 80-94 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  12. 2018

  13. Dereplication of microbial metabolites through database search of mass spectra

    Mohimani, H., Гуревич, А. А., Шлемов, А. Ю., Михеенко, А. А., Коробейников, А. И., Cao, L., Щербин, Е., Nothias, L-F., Dorrestein, P. C. & Певзнер, П. А., 1 Dec 2018, In: Nature Communications. 9, 1, 12 p., 4035.

    Research output: Contribution to journal › Article › peer-review

  14. Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data

    Alexandrov, T., Golyandina, N., Holloway, D., Shlemov, A. & Spirov, A., 1 Nov 2018, In: Journal of Computational Biology. 25, 11, p. 1220–1230 11 p.

    Research output: Contribution to journal › Article › peer-review

  15. Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra

    Гуревич, А. А., Михеенко, А. А., Шлемов, А. Ю., Коробейников, А. И., Mohimani, H. & Певзнер, П. А., 1 Mar 2018, In: Nature Microbiology. 3, 3, p. 319-327 9 p.

    Research output: Contribution to journal › Article › peer-review

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