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WebQUAST: online evaluation of genome assemblies. / Михеенко, Алла Александровна; Савельев, Владислав Владимирович; Hirsch, Pascal ; Гуревич, Алексей Александрович.

в: Nucleic Acids Research, Том 51, № W1, 17.05.2023, стр. 601-606.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

Harvard

Михеенко, АА, Савельев, ВВ, Hirsch, P & Гуревич, АА 2023, 'WebQUAST: online evaluation of genome assemblies', Nucleic Acids Research, Том. 51, № W1, стр. 601-606. https://doi.org/10.1093/nar/gkad406

APA

Михеенко, А. А., Савельев, В. В., Hirsch, P., & Гуревич, А. А. (2023). WebQUAST: online evaluation of genome assemblies. Nucleic Acids Research, 51(W1), 601-606. https://doi.org/10.1093/nar/gkad406

Vancouver

Михеенко АА, Савельев ВВ, Hirsch P, Гуревич АА. WebQUAST: online evaluation of genome assemblies. Nucleic Acids Research. 2023 Май 17;51(W1):601-606. https://doi.org/10.1093/nar/gkad406

Author

Михеенко, Алла Александровна ; Савельев, Владислав Владимирович ; Hirsch, Pascal ; Гуревич, Алексей Александрович. / WebQUAST: online evaluation of genome assemblies. в: Nucleic Acids Research. 2023 ; Том 51, № W1. стр. 601-606.

BibTeX

@article{b9889ed71cbd4b958490dd657ad2d105,
title = "WebQUAST: online evaluation of genome assemblies",
abstract = "Selecting proper genome assembly is key for downstream analysis in genomics studies. However, the availability of many genome assembly tools and the huge variety of their running parameters challenge this task. The existing online evaluation tools are limited to specific taxa or provide just a one-sided view on the assembly quality. We present WebQUAST, a web server for multifaceted quality assessment and comparison of genome assemblies based on the state-of-the-art QUAST tool. The server is freely available at https://www.ccb.uni-saarland.de/quast/. WebQUAST can handle an unlimited number of genome assemblies and evaluate them against a user-provided or pre-loaded reference genome or in a completely reference-free fashion. We demonstrate key WebQUAST features in three common evaluation scenarios: assembly of an unknown species, a model organism, and a close variant of it.",
keywords = "Genome, Genomics, High-Throughput Nucleotide Sequencing, Internet, Sequence Analysis, DNA, Software",
author = "Михеенко, {Алла Александровна} and Савельев, {Владислав Владимирович} and Pascal Hirsch and Гуревич, {Алексей Александрович}",
year = "2023",
month = may,
day = "17",
doi = "10.1093/nar/gkad406",
language = "English",
volume = "51",
pages = "601--606",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "W1",

}

RIS

TY - JOUR

T1 - WebQUAST: online evaluation of genome assemblies

AU - Михеенко, Алла Александровна

AU - Савельев, Владислав Владимирович

AU - Hirsch, Pascal

AU - Гуревич, Алексей Александрович

PY - 2023/5/17

Y1 - 2023/5/17

N2 - Selecting proper genome assembly is key for downstream analysis in genomics studies. However, the availability of many genome assembly tools and the huge variety of their running parameters challenge this task. The existing online evaluation tools are limited to specific taxa or provide just a one-sided view on the assembly quality. We present WebQUAST, a web server for multifaceted quality assessment and comparison of genome assemblies based on the state-of-the-art QUAST tool. The server is freely available at https://www.ccb.uni-saarland.de/quast/. WebQUAST can handle an unlimited number of genome assemblies and evaluate them against a user-provided or pre-loaded reference genome or in a completely reference-free fashion. We demonstrate key WebQUAST features in three common evaluation scenarios: assembly of an unknown species, a model organism, and a close variant of it.

AB - Selecting proper genome assembly is key for downstream analysis in genomics studies. However, the availability of many genome assembly tools and the huge variety of their running parameters challenge this task. The existing online evaluation tools are limited to specific taxa or provide just a one-sided view on the assembly quality. We present WebQUAST, a web server for multifaceted quality assessment and comparison of genome assemblies based on the state-of-the-art QUAST tool. The server is freely available at https://www.ccb.uni-saarland.de/quast/. WebQUAST can handle an unlimited number of genome assemblies and evaluate them against a user-provided or pre-loaded reference genome or in a completely reference-free fashion. We demonstrate key WebQUAST features in three common evaluation scenarios: assembly of an unknown species, a model organism, and a close variant of it.

KW - Genome

KW - Genomics

KW - High-Throughput Nucleotide Sequencing

KW - Internet

KW - Sequence Analysis, DNA

KW - Software

UR - https://www.mendeley.com/catalogue/a1cddb55-ee5d-3cbe-b4a4-039d585fcf98/

U2 - 10.1093/nar/gkad406

DO - 10.1093/nar/gkad406

M3 - Article

C2 - 37194696

VL - 51

SP - 601

EP - 606

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - W1

ER -

ID: 114443543