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The Rhodobacter capsulatus genome. / Haselkorn, Robert; Lapidus, Alla; Kogan, Yakov; Vlcek, Cestmir; Paces, Jan; Paces, Vaclav; Ulbrich, Pavel; Pecenkova, Tamara; Rebrekov, Denis; Milgram, Arthur; Mazur, Mikhail; Cox, Randal; Kyrpides, Nikos; Kapatral, Vinayak; Los, Tamara; Lykidis, Athanasios; Reznik, Gary; Vasieva, Olga; Fonstein, Michael.

в: Photosynthesis Research, Том 70, № 1, 2001, стр. 43-52.

Результаты исследований: Научные публикации в периодических изданиях › Краткий обзор › Рецензирование

Harvard

Haselkorn, R, Lapidus, A, Kogan, Y, Vlcek, C, Paces, J, Paces, V, Ulbrich, P, Pecenkova, T, Rebrekov, D, Milgram, A, Mazur, M, Cox, R, Kyrpides, N, Kapatral, V, Los, T, Lykidis, A, Reznik, G, Vasieva, O & Fonstein, M 2001, 'The Rhodobacter capsulatus genome', Photosynthesis Research, Том. 70, № 1, стр. 43-52. https://doi.org/10.1023/A:1013883807771

APA

Haselkorn, R., Lapidus, A., Kogan, Y., Vlcek, C., Paces, J., Paces, V., Ulbrich, P., Pecenkova, T., Rebrekov, D., Milgram, A., Mazur, M., Cox, R., Kyrpides, N., Kapatral, V., Los, T., Lykidis, A., Reznik, G., Vasieva, O., & Fonstein, M. (2001). The Rhodobacter capsulatus genome. Photosynthesis Research, 70(1), 43-52. https://doi.org/10.1023/A:1013883807771

Vancouver

Haselkorn R, Lapidus A, Kogan Y, Vlcek C, Paces J, Paces V и пр. The Rhodobacter capsulatus genome. Photosynthesis Research. 2001;70(1):43-52. https://doi.org/10.1023/A:1013883807771

Author

Haselkorn, Robert ; Lapidus, Alla ; Kogan, Yakov ; Vlcek, Cestmir ; Paces, Jan ; Paces, Vaclav ; Ulbrich, Pavel ; Pecenkova, Tamara ; Rebrekov, Denis ; Milgram, Arthur ; Mazur, Mikhail ; Cox, Randal ; Kyrpides, Nikos ; Kapatral, Vinayak ; Los, Tamara ; Lykidis, Athanasios ; Reznik, Gary ; Vasieva, Olga ; Fonstein, Michael. / The Rhodobacter capsulatus genome. в: Photosynthesis Research. 2001 ; Том 70, № 1. стр. 43-52.

BibTeX

@article{5a4621ba95c04fa89f2db3151c80a871,
title = "The Rhodobacter capsulatus genome",
abstract = "The genome of Rhodobacter capsulatus has been completely sequenced. It consists of a single chromosome containing 3.5 Mb and a circular plasmid of 134 kb. This effort, started in 1992, began with a fine-structure restriction map of an overlapping set of cosmids that covered the genome. Cosmid sequencing led to a gapped genome that was filled by primer walking on the chromosome and by using lambda clones. Methods had to be developed to handle strong stops in the high GC (68%) inserts. Annotation was done with the ERGO system at Integrated Genomics, as was the reconstruction of the cell's metabolism. It was possible to recognize 3709 orfs of which functional assignments could be made with high confidence to 2392 (65%). Unusual features include the presence of numerous cryptic phage genomes embedded in the chromosome.",
keywords = "Annotation, Comparative genomics, DNA sequence, Metabolic reconstruction",
author = "Robert Haselkorn and Alla Lapidus and Yakov Kogan and Cestmir Vlcek and Jan Paces and Vaclav Paces and Pavel Ulbrich and Tamara Pecenkova and Denis Rebrekov and Arthur Milgram and Mikhail Mazur and Randal Cox and Nikos Kyrpides and Vinayak Kapatral and Tamara Los and Athanasios Lykidis and Gary Reznik and Olga Vasieva and Michael Fonstein",
note = "Funding Information: Early stages of this project were supported by the Department of Energy and a grant from the National Science Foundation for international cooperation with the sequencing group in Prague. Work in Prague was additionally supported by grant number MSM 223300006.",
year = "2001",
doi = "10.1023/A:1013883807771",
language = "English",
volume = "70",
pages = "43--52",
journal = "Photosynthesis Research",
issn = "0166-8595",
publisher = "Springer Nature",
number = "1",

}

RIS

TY - JOUR

T1 - The Rhodobacter capsulatus genome

AU - Haselkorn, Robert

AU - Lapidus, Alla

AU - Kogan, Yakov

AU - Vlcek, Cestmir

AU - Paces, Jan

AU - Paces, Vaclav

AU - Ulbrich, Pavel

AU - Pecenkova, Tamara

AU - Rebrekov, Denis

AU - Milgram, Arthur

AU - Mazur, Mikhail

AU - Cox, Randal

AU - Kyrpides, Nikos

AU - Kapatral, Vinayak

AU - Los, Tamara

AU - Lykidis, Athanasios

AU - Reznik, Gary

AU - Vasieva, Olga

AU - Fonstein, Michael

N1 - Funding Information: Early stages of this project were supported by the Department of Energy and a grant from the National Science Foundation for international cooperation with the sequencing group in Prague. Work in Prague was additionally supported by grant number MSM 223300006.

PY - 2001

Y1 - 2001

N2 - The genome of Rhodobacter capsulatus has been completely sequenced. It consists of a single chromosome containing 3.5 Mb and a circular plasmid of 134 kb. This effort, started in 1992, began with a fine-structure restriction map of an overlapping set of cosmids that covered the genome. Cosmid sequencing led to a gapped genome that was filled by primer walking on the chromosome and by using lambda clones. Methods had to be developed to handle strong stops in the high GC (68%) inserts. Annotation was done with the ERGO system at Integrated Genomics, as was the reconstruction of the cell's metabolism. It was possible to recognize 3709 orfs of which functional assignments could be made with high confidence to 2392 (65%). Unusual features include the presence of numerous cryptic phage genomes embedded in the chromosome.

AB - The genome of Rhodobacter capsulatus has been completely sequenced. It consists of a single chromosome containing 3.5 Mb and a circular plasmid of 134 kb. This effort, started in 1992, began with a fine-structure restriction map of an overlapping set of cosmids that covered the genome. Cosmid sequencing led to a gapped genome that was filled by primer walking on the chromosome and by using lambda clones. Methods had to be developed to handle strong stops in the high GC (68%) inserts. Annotation was done with the ERGO system at Integrated Genomics, as was the reconstruction of the cell's metabolism. It was possible to recognize 3709 orfs of which functional assignments could be made with high confidence to 2392 (65%). Unusual features include the presence of numerous cryptic phage genomes embedded in the chromosome.

KW - Annotation

KW - Comparative genomics

KW - DNA sequence

KW - Metabolic reconstruction

UR - http://www.scopus.com/inward/record.url?scp=18244394076&partnerID=8YFLogxK

U2 - 10.1023/A:1013883807771

DO - 10.1023/A:1013883807771

M3 - Short survey

AN - SCOPUS:18244394076

VL - 70

SP - 43

EP - 52

JO - Photosynthesis Research

JF - Photosynthesis Research

SN - 0166-8595

IS - 1

ER -

ID: 90041799