Standard

The genomic basis of trophic strategy in marine bacteria. / Lauro, Federico M.; McDougald, Diane; Thomas, Torsten; Williams, Timothy J.; Egan, Suhelen; Rice, Scott; DeMaere, Matthew Z.; Ting, Lily; Ertan, Haluk; Johnson, Justin; Ferriera, Steven; Lapidus, Alla; Anderson, Iain; Kyrpides, Nikos; Munkf, A. Christine; Detterg, Chris; Hang, Cliff S.; Brown, Mark V.; Robb, Frank T.; Kjelleberg, Staffan; Cavicchioli, Ricardo.

в: Proceedings of the National Academy of Sciences of the United States of America, Том 106, № 37, 15.09.2009, стр. 15527-15533.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

Harvard

Lauro, FM, McDougald, D, Thomas, T, Williams, TJ, Egan, S, Rice, S, DeMaere, MZ, Ting, L, Ertan, H, Johnson, J, Ferriera, S, Lapidus, A, Anderson, I, Kyrpides, N, Munkf, AC, Detterg, C, Hang, CS, Brown, MV, Robb, FT, Kjelleberg, S & Cavicchioli, R 2009, 'The genomic basis of trophic strategy in marine bacteria', Proceedings of the National Academy of Sciences of the United States of America, Том. 106, № 37, стр. 15527-15533. https://doi.org/10.1073/pnas.0903507106

APA

Lauro, F. M., McDougald, D., Thomas, T., Williams, T. J., Egan, S., Rice, S., DeMaere, M. Z., Ting, L., Ertan, H., Johnson, J., Ferriera, S., Lapidus, A., Anderson, I., Kyrpides, N., Munkf, A. C., Detterg, C., Hang, C. S., Brown, M. V., Robb, F. T., ... Cavicchioli, R. (2009). The genomic basis of trophic strategy in marine bacteria. Proceedings of the National Academy of Sciences of the United States of America, 106(37), 15527-15533. https://doi.org/10.1073/pnas.0903507106

Vancouver

Lauro FM, McDougald D, Thomas T, Williams TJ, Egan S, Rice S и пр. The genomic basis of trophic strategy in marine bacteria. Proceedings of the National Academy of Sciences of the United States of America. 2009 Сент. 15;106(37):15527-15533. https://doi.org/10.1073/pnas.0903507106

Author

Lauro, Federico M. ; McDougald, Diane ; Thomas, Torsten ; Williams, Timothy J. ; Egan, Suhelen ; Rice, Scott ; DeMaere, Matthew Z. ; Ting, Lily ; Ertan, Haluk ; Johnson, Justin ; Ferriera, Steven ; Lapidus, Alla ; Anderson, Iain ; Kyrpides, Nikos ; Munkf, A. Christine ; Detterg, Chris ; Hang, Cliff S. ; Brown, Mark V. ; Robb, Frank T. ; Kjelleberg, Staffan ; Cavicchioli, Ricardo. / The genomic basis of trophic strategy in marine bacteria. в: Proceedings of the National Academy of Sciences of the United States of America. 2009 ; Том 106, № 37. стр. 15527-15533.

BibTeX

@article{20f35293f8ee458eb4c0bf5e812d33af,
title = "The genomic basis of trophic strategy in marine bacteria",
abstract = "Many marine bacteria have evolved to grow optimally at either high (copiotrophic) or low (oligotrophic) nutrient concentrations, enabling different species to colonize distinct trophic habitats in the oceans. Here, we compare the genome sequences of two bacteria, Photobacterium angustum S14 and Sphingopyxis alaskensis RB2256, that serve as useful model organisms for copiotrophic and oligotrophic modes of life and specifically relate the genomic features to trophic strategy for these organisms and define their molecular mechanisms of adaptation. We developed a model for predicting trophic lifestyle from genome sequence data and tested >400,000 proteins representing >500 million nucleotides of sequence data from 126 genome sequences with metagenome data of whole environmental samples. When applied to available oceanic metagenome data (e.g., the Global Ocean Survey data) the model demonstrated that oligotrophs, and not the more readily isolatable copiotrophs, dominate the ocean's free-living microbial populations. Using our model, it is now possible to define the types of bacteria that specific ocean niches are capable of sustaining.",
keywords = "Microbial adaptation and ecology, Microbial genomics and metagenomics, Monitoring environmental health, Trophic adaptation",
author = "Lauro, {Federico M.} and Diane McDougald and Torsten Thomas and Williams, {Timothy J.} and Suhelen Egan and Scott Rice and DeMaere, {Matthew Z.} and Lily Ting and Haluk Ertan and Justin Johnson and Steven Ferriera and Alla Lapidus and Iain Anderson and Nikos Kyrpides and Munkf, {A. Christine} and Chris Detterg and Hang, {Cliff S.} and Brown, {Mark V.} and Robb, {Frank T.} and Staffan Kjelleberg and Ricardo Cavicchioli",
year = "2009",
month = sep,
day = "15",
doi = "10.1073/pnas.0903507106",
language = "English",
volume = "106",
pages = "15527--15533",
journal = "Proceedings of the National Academy of Sciences of the United States of America",
issn = "0027-8424",
publisher = "National Academy of Sciences",
number = "37",

}

RIS

TY - JOUR

T1 - The genomic basis of trophic strategy in marine bacteria

AU - Lauro, Federico M.

AU - McDougald, Diane

AU - Thomas, Torsten

AU - Williams, Timothy J.

AU - Egan, Suhelen

AU - Rice, Scott

AU - DeMaere, Matthew Z.

AU - Ting, Lily

AU - Ertan, Haluk

AU - Johnson, Justin

AU - Ferriera, Steven

AU - Lapidus, Alla

AU - Anderson, Iain

AU - Kyrpides, Nikos

AU - Munkf, A. Christine

AU - Detterg, Chris

AU - Hang, Cliff S.

AU - Brown, Mark V.

AU - Robb, Frank T.

AU - Kjelleberg, Staffan

AU - Cavicchioli, Ricardo

PY - 2009/9/15

Y1 - 2009/9/15

N2 - Many marine bacteria have evolved to grow optimally at either high (copiotrophic) or low (oligotrophic) nutrient concentrations, enabling different species to colonize distinct trophic habitats in the oceans. Here, we compare the genome sequences of two bacteria, Photobacterium angustum S14 and Sphingopyxis alaskensis RB2256, that serve as useful model organisms for copiotrophic and oligotrophic modes of life and specifically relate the genomic features to trophic strategy for these organisms and define their molecular mechanisms of adaptation. We developed a model for predicting trophic lifestyle from genome sequence data and tested >400,000 proteins representing >500 million nucleotides of sequence data from 126 genome sequences with metagenome data of whole environmental samples. When applied to available oceanic metagenome data (e.g., the Global Ocean Survey data) the model demonstrated that oligotrophs, and not the more readily isolatable copiotrophs, dominate the ocean's free-living microbial populations. Using our model, it is now possible to define the types of bacteria that specific ocean niches are capable of sustaining.

AB - Many marine bacteria have evolved to grow optimally at either high (copiotrophic) or low (oligotrophic) nutrient concentrations, enabling different species to colonize distinct trophic habitats in the oceans. Here, we compare the genome sequences of two bacteria, Photobacterium angustum S14 and Sphingopyxis alaskensis RB2256, that serve as useful model organisms for copiotrophic and oligotrophic modes of life and specifically relate the genomic features to trophic strategy for these organisms and define their molecular mechanisms of adaptation. We developed a model for predicting trophic lifestyle from genome sequence data and tested >400,000 proteins representing >500 million nucleotides of sequence data from 126 genome sequences with metagenome data of whole environmental samples. When applied to available oceanic metagenome data (e.g., the Global Ocean Survey data) the model demonstrated that oligotrophs, and not the more readily isolatable copiotrophs, dominate the ocean's free-living microbial populations. Using our model, it is now possible to define the types of bacteria that specific ocean niches are capable of sustaining.

KW - Microbial adaptation and ecology

KW - Microbial genomics and metagenomics

KW - Monitoring environmental health

KW - Trophic adaptation

UR - http://www.scopus.com/inward/record.url?scp=70349458100&partnerID=8YFLogxK

U2 - 10.1073/pnas.0903507106

DO - 10.1073/pnas.0903507106

M3 - Article

C2 - 19805210

AN - SCOPUS:70349458100

VL - 106

SP - 15527

EP - 15533

JO - Proceedings of the National Academy of Sciences of the United States of America

JF - Proceedings of the National Academy of Sciences of the United States of America

SN - 0027-8424

IS - 37

ER -

ID: 90033194