The difference between cellulolytic ‘culturomes’ and microbiomes inhabiting two contrasting soil types

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The difference between cellulolytic ‘culturomes’ and microbiomes inhabiting two contrasting soil types. / Evdokimova, Elizaveta V.; Gladkov, Grigory V.; Kuzina, Natalya I.; Ivanova, Ekaterina A.; Kimeklis, Anastasiia K.; Zverev, Aleksei O.; Kichko, Arina A.; Aksenova, Tatyana S.; Pinaev, Alexander G.; Andronov, Evgeny E.

в: PLoS ONE, Том 15, № 11 November, e0242060, 11.2020.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

BibTeX

@article{c192d3f9fd284fe29f722b770330e3bb,

title = "The difference between cellulolytic {\textquoteleft}culturomes{\textquoteright} and microbiomes inhabiting two contrasting soil types",

abstract = "High-throughput 16S rRNA sequencing was performed to compare the microbiomes inhabiting two contrasting soil types—sod-podzolic soil and chernozem—and the corresponding culturome communities of potentially cellulolytic bacteria cultured on standard Hutchinson media. For each soil type, soil-specific microorganisms have been identified: for sod-podzolic soil—Acidothermus, Devosia, Phenylobacterium and Tumebacillus, and for chernozem soil—Sphingomonas, Bacillus and Blastococcus. The dynamics of differences between soil types for bulk soil samples and culturomes varied depending on the taxonomic level of the corresponding phylotypes. At high taxonomic levels, the number of common taxa between soil types increased more slowly for bulk soil than for culturome. Differences between soil-specific phylotypes were detected in bulk soil at a low taxonomic level (genus, species). A total of 13 phylotypes were represented both in soil and in culturome. No relationship was shown between the abundance of these phylotypes in soil and culturome.",

author = "Evdokimova, {Elizaveta V.} and Gladkov, {Grigory V.} and Kuzina, {Natalya I.} and Ivanova, {Ekaterina A.} and Kimeklis, {Anastasiia K.} and Zverev, {Aleksei O.} and Kichko, {Arina A.} and Aksenova, {Tatyana S.} and Pinaev, {Alexander G.} and Andronov, {Evgeny E.}",

note = "Publisher Copyright: {\textcopyright} 2020 Evdokimova et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",

year = "2020",

month = nov,

doi = "10.1371/journal.pone.0242060",

language = "English",

volume = "15",

journal = "PLoS ONE",

issn = "1932-6203",

publisher = "Public Library of Science",

number = "11 November",

}

RIS

TY - JOUR

T1 - The difference between cellulolytic ‘culturomes’ and microbiomes inhabiting two contrasting soil types

AU - Evdokimova, Elizaveta V.

AU - Gladkov, Grigory V.

AU - Kuzina, Natalya I.

AU - Ivanova, Ekaterina A.

AU - Kimeklis, Anastasiia K.

AU - Zverev, Aleksei O.

AU - Kichko, Arina A.

AU - Aksenova, Tatyana S.

AU - Pinaev, Alexander G.

AU - Andronov, Evgeny E.

N1 - Publisher Copyright: © 2020 Evdokimova et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

PY - 2020/11

Y1 - 2020/11

N2 - High-throughput 16S rRNA sequencing was performed to compare the microbiomes inhabiting two contrasting soil types—sod-podzolic soil and chernozem—and the corresponding culturome communities of potentially cellulolytic bacteria cultured on standard Hutchinson media. For each soil type, soil-specific microorganisms have been identified: for sod-podzolic soil—Acidothermus, Devosia, Phenylobacterium and Tumebacillus, and for chernozem soil—Sphingomonas, Bacillus and Blastococcus. The dynamics of differences between soil types for bulk soil samples and culturomes varied depending on the taxonomic level of the corresponding phylotypes. At high taxonomic levels, the number of common taxa between soil types increased more slowly for bulk soil than for culturome. Differences between soil-specific phylotypes were detected in bulk soil at a low taxonomic level (genus, species). A total of 13 phylotypes were represented both in soil and in culturome. No relationship was shown between the abundance of these phylotypes in soil and culturome.

AB - High-throughput 16S rRNA sequencing was performed to compare the microbiomes inhabiting two contrasting soil types—sod-podzolic soil and chernozem—and the corresponding culturome communities of potentially cellulolytic bacteria cultured on standard Hutchinson media. For each soil type, soil-specific microorganisms have been identified: for sod-podzolic soil—Acidothermus, Devosia, Phenylobacterium and Tumebacillus, and for chernozem soil—Sphingomonas, Bacillus and Blastococcus. The dynamics of differences between soil types for bulk soil samples and culturomes varied depending on the taxonomic level of the corresponding phylotypes. At high taxonomic levels, the number of common taxa between soil types increased more slowly for bulk soil than for culturome. Differences between soil-specific phylotypes were detected in bulk soil at a low taxonomic level (genus, species). A total of 13 phylotypes were represented both in soil and in culturome. No relationship was shown between the abundance of these phylotypes in soil and culturome.

UR - http://www.scopus.com/inward/record.url?scp=85096814680&partnerID=8YFLogxK

U2 - 10.1371/journal.pone.0242060

DO - 10.1371/journal.pone.0242060

M3 - Article

C2 - 33216789

AN - SCOPUS:85096814680

VL - 15

JO - PLoS ONE

JF - PLoS ONE

SN - 1932-6203

IS - 11 November

M1 - e0242060

ER -

ID: 95576122