The spectrum of software packages for the physics of charged particles beams is extremely wide. From most popular and effective systems can be allocated such programs as COSY Infinity, MAD X, MARYLIE, TRANSPORT. Heterogeneous individual formats of input and output data, the lack of a common and user-friendly interface and the narrow specialization of these programs poses a number of challenges for the modern researchers. It significantly reduces the effectiveness and quality of corresponding computational experiments. In this article we present a universal tool for automation and acceleration of computing experiments. The authors consider a method for developing the concept and prototype of a corresponding software package that would combine the advantages of existing (non-commercial) systems. This software will be able to unify the input and output data format for certain programs, visualize the information in various ways, provide reference and training information for "beginners". The results obtained within the developed framework will be a significant contribution both to the development of numerical and symbolical methods for solving evolution nonlinear equations.