Standard

SGTK: a toolkit for visualization and assessment of scaffold graphs. / Kunyavskaya, O.; Prjibelski, A.D.

в: Bioinformatics, Том 35, № 13, 01.07.2019, стр. 2303-2305.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

Harvard

Kunyavskaya, O & Prjibelski, AD 2019, 'SGTK: a toolkit for visualization and assessment of scaffold graphs', Bioinformatics, Том. 35, № 13, стр. 2303-2305. https://doi.org/10.1093/bioinformatics/bty956

APA

Kunyavskaya, O., & Prjibelski, A. D. (2019). SGTK: a toolkit for visualization and assessment of scaffold graphs. Bioinformatics, 35(13), 2303-2305. https://doi.org/10.1093/bioinformatics/bty956

Vancouver

Kunyavskaya O, Prjibelski AD. SGTK: a toolkit for visualization and assessment of scaffold graphs. Bioinformatics. 2019 Июль 1;35(13):2303-2305. https://doi.org/10.1093/bioinformatics/bty956

Author

Kunyavskaya, O. ; Prjibelski, A.D. / SGTK: a toolkit for visualization and assessment of scaffold graphs. в: Bioinformatics. 2019 ; Том 35, № 13. стр. 2303-2305.

BibTeX

@article{5fc3ef765a7349ef9f726db765a3667c,
title = "SGTK: a toolkit for visualization and assessment of scaffold graphs",
abstract = "Scaffolding is an important step in every genome assembly pipeline, which allows to order contigs into longer sequences using various types of linkage information, such as mate-pair libraries and long reads. In this work, we operate with a notion of a scaffold graph-a graph, verti-ces of which correspond to the assembled contigs and edges represent connections between them. We present a software package called Scaffold Graph ToolKit that allows to construct and visualize scaffold graphs using different kinds of sequencing data. We show that the scaffold graph appears to be useful for analyzing and assessing genome assemblies, and demonstrate several use cases that can be helpful for both assembly software developers and their users.",
keywords = "GENOME, ABYSS",
author = "O. Kunyavskaya and A.D. Prjibelski",
note = "Publisher Copyright: {\textcopyright} The Author 2018. Published by Oxford University Press. All rights reserved.",
year = "2019",
month = jul,
day = "1",
doi = "10.1093/bioinformatics/bty956",
language = "English",
volume = "35",
pages = "2303--2305",
journal = "Bioinformatics",
issn = "1367-4803",
publisher = "Oxford University Press",
number = "13",

}

RIS

TY - JOUR

T1 - SGTK: a toolkit for visualization and assessment of scaffold graphs

AU - Kunyavskaya, O.

AU - Prjibelski, A.D.

N1 - Publisher Copyright: © The Author 2018. Published by Oxford University Press. All rights reserved.

PY - 2019/7/1

Y1 - 2019/7/1

N2 - Scaffolding is an important step in every genome assembly pipeline, which allows to order contigs into longer sequences using various types of linkage information, such as mate-pair libraries and long reads. In this work, we operate with a notion of a scaffold graph-a graph, verti-ces of which correspond to the assembled contigs and edges represent connections between them. We present a software package called Scaffold Graph ToolKit that allows to construct and visualize scaffold graphs using different kinds of sequencing data. We show that the scaffold graph appears to be useful for analyzing and assessing genome assemblies, and demonstrate several use cases that can be helpful for both assembly software developers and their users.

AB - Scaffolding is an important step in every genome assembly pipeline, which allows to order contigs into longer sequences using various types of linkage information, such as mate-pair libraries and long reads. In this work, we operate with a notion of a scaffold graph-a graph, verti-ces of which correspond to the assembled contigs and edges represent connections between them. We present a software package called Scaffold Graph ToolKit that allows to construct and visualize scaffold graphs using different kinds of sequencing data. We show that the scaffold graph appears to be useful for analyzing and assessing genome assemblies, and demonstrate several use cases that can be helpful for both assembly software developers and their users.

KW - GENOME

KW - ABYSS

UR - http://www.scopus.com/inward/record.url?scp=85069784514&partnerID=8YFLogxK

UR - http://www.mendeley.com/research/sgtk-toolkit-visualization-assessment-scaffold-graphs

U2 - 10.1093/bioinformatics/bty956

DO - 10.1093/bioinformatics/bty956

M3 - Article

C2 - 30475983

VL - 35

SP - 2303

EP - 2305

JO - Bioinformatics

JF - Bioinformatics

SN - 1367-4803

IS - 13

ER -

ID: 36061186