TY - JOUR

T1 - Method of prediction and optimization of conformational motion of proteins based on mass transportation principle

AU - Koshevoy, A.A.

AU - Stepanov, E.O.

AU - Porozov, Y.B.

PY - 2014

Y1 - 2014

N2 - The paper highlights approaches to fast prediction of protein conformational mobility. A new mathematical model based on the transportation principle is proposed. We describe an algorithm and soft-ware developed for a construction of the possible trajectories of the large-scale conformational motions of proteins (i.e. movements that occur within relatively large time intervals of the order of milliseconds). The modeling showed that the proposed method provides adequate, in terms of current knowledge of the biology and physics of proteins, results and allows simulation of large-scale conformational transitions for less time. © 2014 Pleiades Publishing, Inc.

AB - The paper highlights approaches to fast prediction of protein conformational mobility. A new mathematical model based on the transportation principle is proposed. We describe an algorithm and soft-ware developed for a construction of the possible trajectories of the large-scale conformational motions of proteins (i.e. movements that occur within relatively large time intervals of the order of milliseconds). The modeling showed that the proposed method provides adequate, in terms of current knowledge of the biology and physics of proteins, results and allows simulation of large-scale conformational transitions for less time. © 2014 Pleiades Publishing, Inc.

U2 - 10.1134/S0006350914010035

DO - 10.1134/S0006350914010035

M3 - Article

SP - 28

EP - 34

JO - Biophysics (Russian Federation)

JF - Biophysics (Russian Federation)

SN - 0006-3509

IS - 1

ER -