Standard

Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment. / Breider, Sven; Teshima, Hazuki; Petersen, Jörn; Chertkov, Olga; Dalingault, Hajnalka; Chen, Amy; Pati, Amrita; Ivanova, Natalia; Lapidus, Alla; Goodwin, Lynne A.; Chain, Patrick; Detter, John C.; Rohde, Manfred; Tindall, Brian J.; Kyrpides, Nikos C.; Woyke, Tanja; Simon, Meinhard; Göker, Markus; Klenk, Hans Peter; Brinkhoff, Thorsten.

в: Standards in Genomic Sciences, Том 9, № 3, 01.12.2013.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

Harvard

Breider, S, Teshima, H, Petersen, J, Chertkov, O, Dalingault, H, Chen, A, Pati, A, Ivanova, N, Lapidus, A, Goodwin, LA, Chain, P, Detter, JC, Rohde, M, Tindall, BJ, Kyrpides, NC, Woyke, T, Simon, M, Göker, M, Klenk, HP & Brinkhoff, T 2013, 'Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment', Standards in Genomic Sciences, Том. 9, № 3. https://doi.org/10.4056/sigs.3828824

APA

Breider, S., Teshima, H., Petersen, J., Chertkov, O., Dalingault, H., Chen, A., Pati, A., Ivanova, N., Lapidus, A., Goodwin, L. A., Chain, P., Detter, J. C., Rohde, M., Tindall, B. J., Kyrpides, N. C., Woyke, T., Simon, M., Göker, M., Klenk, H. P., & Brinkhoff, T. (2013). Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment. Standards in Genomic Sciences, 9(3). https://doi.org/10.4056/sigs.3828824

Vancouver

Breider S, Teshima H, Petersen J, Chertkov O, Dalingault H, Chen A и пр. Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment. Standards in Genomic Sciences. 2013 Дек. 1;9(3). https://doi.org/10.4056/sigs.3828824

Author

Breider, Sven ; Teshima, Hazuki ; Petersen, Jörn ; Chertkov, Olga ; Dalingault, Hajnalka ; Chen, Amy ; Pati, Amrita ; Ivanova, Natalia ; Lapidus, Alla ; Goodwin, Lynne A. ; Chain, Patrick ; Detter, John C. ; Rohde, Manfred ; Tindall, Brian J. ; Kyrpides, Nikos C. ; Woyke, Tanja ; Simon, Meinhard ; Göker, Markus ; Klenk, Hans Peter ; Brinkhoff, Thorsten. / Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment. в: Standards in Genomic Sciences. 2013 ; Том 9, № 3.

BibTeX

@article{57cdb6aabbc247d8a3ba0cc0514266fb,
title = "Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment",
abstract = "Leisingera nanhaiensis DSM 24252T is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252T possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera.",
keywords = "Facultative anaerobe, Marine, Methylated compounds, Motile, Rhodobacteraceae, Roseobacter clade",
author = "Sven Breider and Hazuki Teshima and J{\"o}rn Petersen and Olga Chertkov and Hajnalka Dalingault and Amy Chen and Amrita Pati and Natalia Ivanova and Alla Lapidus and Goodwin, {Lynne A.} and Patrick Chain and Detter, {John C.} and Manfred Rohde and Tindall, {Brian J.} and Kyrpides, {Nikos C.} and Tanja Woyke and Meinhard Simon and Markus G{\"o}ker and Klenk, {Hans Peter} and Thorsten Brinkhoff",
year = "2013",
month = dec,
day = "1",
doi = "10.4056/sigs.3828824",
language = "English",
volume = "9",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "3",

}

RIS

TY - JOUR

T1 - Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment

AU - Breider, Sven

AU - Teshima, Hazuki

AU - Petersen, Jörn

AU - Chertkov, Olga

AU - Dalingault, Hajnalka

AU - Chen, Amy

AU - Pati, Amrita

AU - Ivanova, Natalia

AU - Lapidus, Alla

AU - Goodwin, Lynne A.

AU - Chain, Patrick

AU - Detter, John C.

AU - Rohde, Manfred

AU - Tindall, Brian J.

AU - Kyrpides, Nikos C.

AU - Woyke, Tanja

AU - Simon, Meinhard

AU - Göker, Markus

AU - Klenk, Hans Peter

AU - Brinkhoff, Thorsten

PY - 2013/12/1

Y1 - 2013/12/1

N2 - Leisingera nanhaiensis DSM 24252T is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252T possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera.

AB - Leisingera nanhaiensis DSM 24252T is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252T possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera.

KW - Facultative anaerobe

KW - Marine

KW - Methylated compounds

KW - Motile

KW - Rhodobacteraceae

KW - Roseobacter clade

UR - http://www.scopus.com/inward/record.url?scp=84893377192&partnerID=8YFLogxK

U2 - 10.4056/sigs.3828824

DO - 10.4056/sigs.3828824

M3 - Article

AN - SCOPUS:84893377192

VL - 9

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 3

ER -

ID: 36051578