TY - JOUR

T1 - GATA family transcription factors in alga Chlamydomonas reinhardtii

AU - Virolainen, P.A.

AU - Chekunova, E.M.

N1 - Export Date: 21 March 2024 CODEN: CUGED Адрес для корреспонденции: Virolainen, P.A.; Department of Genetics and Biotechnology, Russian Federation; эл. почта: pa.virolainen@gmail.com Химические вещества/CAS: carbon, 7440-44-0; nitrogen, 7727-37-9; transcription factor GATA 1, 125267-48-3; transcription factor GATA 3, 137878-55-8; transcription factor GATA 6, 186434-31-1; Carbon; GATA Transcription Factors Сведения о финансировании: Saint Petersburg State University, SPbU, 115624290 Текст о финансировании 1: The authors acknowledge Saint-Petersburg State University for a research grant (project ID Pure 115624290).

PY - 2024/2/14

Y1 - 2024/2/14

N2 - GATA family transcription factors (GATA-TFs) are metalloproteins that regulate many metabolic pathways. These conserved proteins recognize the consensus sequence (A/T)GATA(A/G) in the promoter regions of many genes and regulate their transcription in response to environmental signals. Currently, the study of GATA-TFs is of increasing interest. GATA genes and their proteins are most actively studied in vascular plants and fungi. Based on the results of numerous studies, it has been shown that GATA factors regulate the metabolic pathways of nitrogen and carbon, and also play a major role in the processes induced by light and circadian rhythms. In algae, GATA-TFs remain poorly studied, and information about them is scattered. In this work, all known data on GATA-TFs in the unicellular green alga Chlamydomonas reinhardtii has been collected and systematized. The genome of this alga contains 12 GATA coding genes. Using the phylogenetic analysis, we identified three classes of GATA factors in C. reinhardtii according to the structure of the zinc finger domain and showed their difference from the classification of GATA factors developed on vascular plants. © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2024.

AB - GATA family transcription factors (GATA-TFs) are metalloproteins that regulate many metabolic pathways. These conserved proteins recognize the consensus sequence (A/T)GATA(A/G) in the promoter regions of many genes and regulate their transcription in response to environmental signals. Currently, the study of GATA-TFs is of increasing interest. GATA genes and their proteins are most actively studied in vascular plants and fungi. Based on the results of numerous studies, it has been shown that GATA factors regulate the metabolic pathways of nitrogen and carbon, and also play a major role in the processes induced by light and circadian rhythms. In algae, GATA-TFs remain poorly studied, and information about them is scattered. In this work, all known data on GATA-TFs in the unicellular green alga Chlamydomonas reinhardtii has been collected and systematized. The genome of this alga contains 12 GATA coding genes. Using the phylogenetic analysis, we identified three classes of GATA factors in C. reinhardtii according to the structure of the zinc finger domain and showed their difference from the classification of GATA factors developed on vascular plants. © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2024.

KW - Algae

KW - Chlamydomonas reinhardtii

KW - Classification

KW - GATA transcription factors

KW - GATA-TFs

KW - Plant GATA

KW - carbon

KW - nitrogen

KW - transcription factor GATA

KW - transcription factor GATA 1

KW - transcription factor gata 10

KW - transcription factor gata 11

KW - transcription factor gata 12

KW - transcription factor GATA 2

KW - transcription factor GATA 3

KW - transcription factor GATA 4

KW - transcription factor GATA 5

KW - transcription factor GATA 6

KW - transcription factor gata 7

KW - transcription factor gata 8

KW - transcription factor gata 9

KW - unclassified drug

KW - alga

KW - amino acid sequence

KW - Arabidopsis thaliana

KW - Article

KW - Aspergillus nidulans

KW - binding site

KW - carbon metabolism

KW - cell interaction

KW - circadian rhythm

KW - classification

KW - comparative study

KW - consensus sequence

KW - controlled study

KW - DNA binding

KW - exon

KW - gene expression

KW - gene knockout

KW - genetic transcription

KW - genome

KW - green alga

KW - intron

KW - lipid metabolism

KW - nitrogen metabolism

KW - nonhuman

KW - phylogenetic tree

KW - phylogeny

KW - promoter region

KW - protein phosphorylation

KW - protein secondary structure

KW - protein structure

KW - regulatory mechanism

KW - rice

KW - signal transduction

KW - transcription regulation

KW - vascular plant

KW - xenobiotic metabolism

KW - zinc finger motif

KW - genetics

KW - Carbon

KW - Circadian Rhythm

KW - GATA Transcription Factors

KW - Phylogeny

UR - https://www.mendeley.com/catalogue/46bc73b3-cabe-3021-92f3-1917f2eab5e2/

U2 - 10.1007/s00294-024-01280-y

DO - 10.1007/s00294-024-01280-y

M3 - статья

VL - 70

JO - Current Genetics

JF - Current Genetics

SN - 0172-8083

IS - 1

ER -