Standard

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T). / Woyke, Tanja; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Huntemann, Marcel; Mavromatis, Konstantinos; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Brambilla, Evelyne Marie; Rohde, Manfred; Mwirichia, Romano; Sikorski, Johannes; Tindall, Brian J.; Göker, Markus; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

в: Standards in Genomic Sciences, Том 5, № 1, 28.10.2011, стр. 21-29.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

Harvard

Woyke, T, Chertkov, O, Lapidus, A, Nolan, M, Lucas, S, del Rio, TG, Tice, H, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Huntemann, M, Mavromatis, K, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Brambilla, EM, Rohde, M, Mwirichia, R, Sikorski, J, Tindall, BJ, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2011, 'Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T)', Standards in Genomic Sciences, Том. 5, № 1, стр. 21-29. https://doi.org/10.4056/sigs.2124912

APA

Woyke, T., Chertkov, O., Lapidus, A., Nolan, M., Lucas, S., del Rio, T. G., Tice, H., Cheng, J. F., Tapia, R., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Pagani, I., Huntemann, M., Mavromatis, K., Pati, A., Chen, A., Palaniappan, K., ... Kyrpides, N. C. (2011). Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T). Standards in Genomic Sciences, 5(1), 21-29. https://doi.org/10.4056/sigs.2124912

Vancouver

Woyke T, Chertkov O, Lapidus A, Nolan M, Lucas S, del Rio TG и пр. Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T). Standards in Genomic Sciences. 2011 Окт. 28;5(1):21-29. https://doi.org/10.4056/sigs.2124912

Author

Woyke, Tanja ; Chertkov, Olga ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Tapia, Roxanne ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Huntemann, Marcel ; Mavromatis, Konstantinos ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Mwirichia, Romano ; Sikorski, Johannes ; Tindall, Brian J. ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T). в: Standards in Genomic Sciences. 2011 ; Том 5, № 1. стр. 21-29.

BibTeX

@article{7c6eff692ab04f1ab2ff029036046305,
title = "Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T)",
abstract = "Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic lo-cation in the genome-sequenced fraction of the tree of life. Strain RW262T forms a monophy-letic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the fami-ly Cryomorphaceae are from marine habitats and have an absolute requirement for Na + ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Chemoorganotrophic, Cryomorphaceae, Flexirubin-synthesizing, GEBA, Gram-negative, Meso-philic, Motile by gliding, Strictly aerobic",
author = "Tanja Woyke and Olga Chertkov and Alla Lapidus and Matt Nolan and Susan Lucas and {del Rio}, {Tijana Glavina} and Hope Tice and Cheng, {Jan Fang} and Roxanne Tapia and Cliff Han and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Ioanna Pagani and Marcel Huntemann and Konstantinos Mavromatis and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Brambilla, {Evelyne Marie} and Manfred Rohde and Romano Mwirichia and Johannes Sikorski and Tindall, {Brian J.} and Markus G{\"o}ker and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Klenk, {Hans Peter} and Kyrpides, {Nikos C.}",
year = "2011",
month = oct,
day = "28",
doi = "10.4056/sigs.2124912",
language = "English",
volume = "5",
pages = "21--29",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "1",

}

RIS

TY - JOUR

T1 - Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262 T)

AU - Woyke, Tanja

AU - Chertkov, Olga

AU - Lapidus, Alla

AU - Nolan, Matt

AU - Lucas, Susan

AU - del Rio, Tijana Glavina

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Tapia, Roxanne

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Pagani, Ioanna

AU - Huntemann, Marcel

AU - Mavromatis, Konstantinos

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Brambilla, Evelyne Marie

AU - Rohde, Manfred

AU - Mwirichia, Romano

AU - Sikorski, Johannes

AU - Tindall, Brian J.

AU - Göker, Markus

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

PY - 2011/10/28

Y1 - 2011/10/28

N2 - Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic lo-cation in the genome-sequenced fraction of the tree of life. Strain RW262T forms a monophy-letic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the fami-ly Cryomorphaceae are from marine habitats and have an absolute requirement for Na + ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic lo-cation in the genome-sequenced fraction of the tree of life. Strain RW262T forms a monophy-letic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the fami-ly Cryomorphaceae are from marine habitats and have an absolute requirement for Na + ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Chemoorganotrophic

KW - Cryomorphaceae

KW - Flexirubin-synthesizing

KW - GEBA

KW - Gram-negative

KW - Meso-philic

KW - Motile by gliding

KW - Strictly aerobic

UR - http://www.scopus.com/inward/record.url?scp=80054858465&partnerID=8YFLogxK

U2 - 10.4056/sigs.2124912

DO - 10.4056/sigs.2124912

M3 - Article

AN - SCOPUS:80054858465

VL - 5

SP - 21

EP - 29

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 1

ER -

ID: 41325575