Standard

Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T). / Djao, Olivier Duplex Ngatchou; Zhang, Xiaojing; Lucas, Susan; Lapidus, Alla; del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Brambilla, Evelyne; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Sikorski, Johannes; Spring, Stefan; Göker, Markus; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

в: Standards in Genomic Sciences, Том 3, № 3, 2010, стр. 267-275.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

Harvard

Djao, ODN, Zhang, X, Lucas, S, Lapidus, A, del Rio, TG, Nolan, M, Tice, H, Cheng, JF, Han, C, Tapia, R, Goodwin, L, Pitluck, S, Liolios, K, Mavromatis, K, Ovchinnikova, G, Pati, A, Brambilla, E, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Sikorski, J, Spring, S, Göker, M, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T)', Standards in Genomic Sciences, Том. 3, № 3, стр. 267-275. https://doi.org/10.4056/sigs.1233249

APA

Djao, O. D. N., Zhang, X., Lucas, S., Lapidus, A., del Rio, T. G., Nolan, M., Tice, H., Cheng, J. F., Han, C., Tapia, R., Goodwin, L., Pitluck, S., Liolios, K., Mavromatis, K., Ovchinnikova, G., Pati, A., Brambilla, E., Chen, A., Palaniappan, K., ... Klenk, H. P. (2010). Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T). Standards in Genomic Sciences, 3(3), 267-275. https://doi.org/10.4056/sigs.1233249

Vancouver

Djao ODN, Zhang X, Lucas S, Lapidus A, del Rio TG, Nolan M и пр. Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T). Standards in Genomic Sciences. 2010;3(3):267-275. https://doi.org/10.4056/sigs.1233249

Author

Djao, Olivier Duplex Ngatchou ; Zhang, Xiaojing ; Lucas, Susan ; Lapidus, Alla ; del Rio, Tijana Glavina ; Nolan, Matt ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Brambilla, Evelyne ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Rohde, Manfred ; Sikorski, Johannes ; Spring, Stefan ; Göker, Markus ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T). в: Standards in Genomic Sciences. 2010 ; Том 3, № 3. стр. 267-275.

BibTeX

@article{da429b067e2b4f6fbe9e275627c658bb,
title = "Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T)",
abstract = "Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrates for other microorganisms. It also contributes significantly to maintain a regular pH in its environment by removing the fatty acids through β-oxidation. The strain is able to metabolize isobutyrate and butyrate, which are the substrate and the product of degradation of the substrate, respectively. This is the first complete genome sequence of a member of the genus Syntrophothermus and the second in the family Syntrophomonadaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,405,559 bp long genome with its 2,385 protein-coding and 55 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Anaerobic, Butyrate, Crotonate, GEBA, Gram-negative, Isobutyrate, Motile, Syntrophism with methanogen, Syntrophomonadaceae",
author = "Djao, {Olivier Duplex Ngatchou} and Xiaojing Zhang and Susan Lucas and Alla Lapidus and {del Rio}, {Tijana Glavina} and Matt Nolan and Hope Tice and Cheng, {Jan Fang} and Cliff Han and Roxanne Tapia and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Konstantinos Mavromatis and Galina Ovchinnikova and Amrita Pati and Evelyne Brambilla and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Manfred Rohde and Johannes Sikorski and Stefan Spring and Markus G{\"o}ker and Detter, {John C.} and Tanja Woyke and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
note = "Funding Information: We would like to gratefully acknowledge the help of Maren Schr{\"o}der (DSMZ) in cultivation of the strain. This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence",
year = "2010",
doi = "10.4056/sigs.1233249",
language = "English",
volume = "3",
pages = "267--275",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "3",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1 T)

AU - Djao, Olivier Duplex Ngatchou

AU - Zhang, Xiaojing

AU - Lucas, Susan

AU - Lapidus, Alla

AU - del Rio, Tijana Glavina

AU - Nolan, Matt

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Tapia, Roxanne

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Brambilla, Evelyne

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Rohde, Manfred

AU - Sikorski, Johannes

AU - Spring, Stefan

AU - Göker, Markus

AU - Detter, John C.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

N1 - Funding Information: We would like to gratefully acknowledge the help of Maren Schröder (DSMZ) in cultivation of the strain. This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence

PY - 2010

Y1 - 2010

N2 - Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrates for other microorganisms. It also contributes significantly to maintain a regular pH in its environment by removing the fatty acids through β-oxidation. The strain is able to metabolize isobutyrate and butyrate, which are the substrate and the product of degradation of the substrate, respectively. This is the first complete genome sequence of a member of the genus Syntrophothermus and the second in the family Syntrophomonadaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,405,559 bp long genome with its 2,385 protein-coding and 55 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrates for other microorganisms. It also contributes significantly to maintain a regular pH in its environment by removing the fatty acids through β-oxidation. The strain is able to metabolize isobutyrate and butyrate, which are the substrate and the product of degradation of the substrate, respectively. This is the first complete genome sequence of a member of the genus Syntrophothermus and the second in the family Syntrophomonadaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,405,559 bp long genome with its 2,385 protein-coding and 55 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Anaerobic

KW - Butyrate

KW - Crotonate

KW - GEBA

KW - Gram-negative

KW - Isobutyrate

KW - Motile

KW - Syntrophism with methanogen

KW - Syntrophomonadaceae

UR - http://www.scopus.com/inward/record.url?scp=80053452303&partnerID=8YFLogxK

U2 - 10.4056/sigs.1233249

DO - 10.4056/sigs.1233249

M3 - Article

AN - SCOPUS:80053452303

VL - 3

SP - 267

EP - 275

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 3

ER -

ID: 87746570