Standard

Complete genome sequence of Saccharomonospora viridis type strain (P101 T). / Pati, Amrita; Sikorski, Johannes; Nolan, Matt; Lapidus, Alla; Copeland, Alex; Glavina Del Rio, Tijana; Lucas, Susan; Chen, Feng; Tice, Hope; Pitluck, Sam; Cheng, Jan Fang; Chertkov, Olga; Brettin, Thomas; Han, Cliff; Detter, John C.; Kuske, Cheryl; Bruce, David; Goodwin, Lynne; Chain, Patrick; D'haeseleer, Patrik; Chen, Amy; Palaniappan, Krishna; Mavromatis, Konstantinos; Rohde, Manfred; Tindall, Brian J.; Göker, Markus; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

в: Standards in Genomic Sciences, Том 1, № 2, 2009, стр. 141-149.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

Harvard

Pati, A, Sikorski, J, Nolan, M, Lapidus, A, Copeland, A, Glavina Del Rio, T, Lucas, S, Chen, F, Tice, H, Pitluck, S, Cheng, JF, Chertkov, O, Brettin, T, Han, C, Detter, JC, Kuske, C, Bruce, D, Goodwin, L, Chain, P, D'haeseleer, P, Chen, A, Palaniappan, K, Mavromatis, K, Rohde, M, Tindall, BJ, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2009, 'Complete genome sequence of Saccharomonospora viridis type strain (P101 T)', Standards in Genomic Sciences, Том. 1, № 2, стр. 141-149. https://doi.org/10.4056/sigs.20263

APA

Pati, A., Sikorski, J., Nolan, M., Lapidus, A., Copeland, A., Glavina Del Rio, T., Lucas, S., Chen, F., Tice, H., Pitluck, S., Cheng, J. F., Chertkov, O., Brettin, T., Han, C., Detter, J. C., Kuske, C., Bruce, D., Goodwin, L., Chain, P., ... Klenk, H. P. (2009). Complete genome sequence of Saccharomonospora viridis type strain (P101 T). Standards in Genomic Sciences, 1(2), 141-149. https://doi.org/10.4056/sigs.20263

Vancouver

Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T и пр. Complete genome sequence of Saccharomonospora viridis type strain (P101 T). Standards in Genomic Sciences. 2009;1(2):141-149. https://doi.org/10.4056/sigs.20263

Author

Pati, Amrita ; Sikorski, Johannes ; Nolan, Matt ; Lapidus, Alla ; Copeland, Alex ; Glavina Del Rio, Tijana ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Pitluck, Sam ; Cheng, Jan Fang ; Chertkov, Olga ; Brettin, Thomas ; Han, Cliff ; Detter, John C. ; Kuske, Cheryl ; Bruce, David ; Goodwin, Lynne ; Chain, Patrick ; D'haeseleer, Patrik ; Chen, Amy ; Palaniappan, Krishna ; Mavromatis, Konstantinos ; Rohde, Manfred ; Tindall, Brian J. ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Saccharomonospora viridis type strain (P101 T). в: Standards in Genomic Sciences. 2009 ; Том 1, № 2. стр. 141-149.

BibTeX

@article{8e53af35ba144b66a28ea6fa8f632b32,
title = "Complete genome sequence of Saccharomonospora viridis type strain (P101 T)",
abstract = "Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer's lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Bagassosis, Farmer's lung disease, Gram-negative actinomycete, Hot compost, Humidifier fever, Pentachlorophenol metabolism, Pseudonocardiaceae, Thermophile",
author = "Amrita Pati and Johannes Sikorski and Matt Nolan and Alla Lapidus and Alex Copeland and {Glavina Del Rio}, Tijana and Susan Lucas and Feng Chen and Hope Tice and Sam Pitluck and Cheng, {Jan Fang} and Olga Chertkov and Thomas Brettin and Cliff Han and Detter, {John C.} and Cheryl Kuske and David Bruce and Lynne Goodwin and Patrick Chain and Patrik D'haeseleer and Amy Chen and Krishna Palaniappan and Konstantinos Mavromatis and Manfred Rohde and Tindall, {Brian J.} and Markus G{\"o}ker and Jim Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
note = "Funding Information: Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396, as well as German Research Foundation (DFG) INST 599/1-1 and SI 1352/1-1. Funding Information: We would like to gratefully acknowledge the help of Marlen Jando for growing S. viridis cultures and Su-sanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence",
year = "2009",
doi = "10.4056/sigs.20263",
language = "English",
volume = "1",
pages = "141--149",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "2",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Saccharomonospora viridis type strain (P101 T)

AU - Pati, Amrita

AU - Sikorski, Johannes

AU - Nolan, Matt

AU - Lapidus, Alla

AU - Copeland, Alex

AU - Glavina Del Rio, Tijana

AU - Lucas, Susan

AU - Chen, Feng

AU - Tice, Hope

AU - Pitluck, Sam

AU - Cheng, Jan Fang

AU - Chertkov, Olga

AU - Brettin, Thomas

AU - Han, Cliff

AU - Detter, John C.

AU - Kuske, Cheryl

AU - Bruce, David

AU - Goodwin, Lynne

AU - Chain, Patrick

AU - D'haeseleer, Patrik

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Mavromatis, Konstantinos

AU - Rohde, Manfred

AU - Tindall, Brian J.

AU - Göker, Markus

AU - Bristow, Jim

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

N1 - Funding Information: Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396, as well as German Research Foundation (DFG) INST 599/1-1 and SI 1352/1-1. Funding Information: We would like to gratefully acknowledge the help of Marlen Jando for growing S. viridis cultures and Su-sanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence

PY - 2009

Y1 - 2009

N2 - Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer's lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer's lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Bagassosis

KW - Farmer's lung disease

KW - Gram-negative actinomycete

KW - Hot compost

KW - Humidifier fever

KW - Pentachlorophenol metabolism

KW - Pseudonocardiaceae

KW - Thermophile

UR - http://www.scopus.com/inward/record.url?scp=80053475268&partnerID=8YFLogxK

U2 - 10.4056/sigs.20263

DO - 10.4056/sigs.20263

M3 - Article

AN - SCOPUS:80053475268

VL - 1

SP - 141

EP - 149

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 2

ER -

ID: 90137719