Standard

Complete genome sequence of acidaminococcus fermentans type strain (VR4 T). / Chang, Yun Juan; Pukall, Rüdiger; Saunders, Elizabeth; Lapidus, Alla; Copeland, Alex; Nolan, Matt; del Rio, Tijana Glavina; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Detter, John C.; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pati, Amrita; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

в: Standards in Genomic Sciences, Том 3, № 1, 2010, стр. 1-14.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

Harvard

Chang, YJ, Pukall, R, Saunders, E, Lapidus, A, Copeland, A, Nolan, M, del Rio, TG, Lucas, S, Chen, F, Tice, H, Cheng, JF, Han, C, Detter, JC, Bruce, D, Goodwin, L, Pitluck, S, Liolios, K, Pati, A, Mavromatis, K, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Brettin, T, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of acidaminococcus fermentans type strain (VR4 T)', Standards in Genomic Sciences, Том. 3, № 1, стр. 1-14. https://doi.org/10.4056/sigs.1002553

APA

Chang, Y. J., Pukall, R., Saunders, E., Lapidus, A., Copeland, A., Nolan, M., del Rio, T. G., Lucas, S., Chen, F., Tice, H., Cheng, J. F., Han, C., Detter, J. C., Bruce, D., Goodwin, L., Pitluck, S., Liolios, K., Pati, A., Mavromatis, K., ... Klenk, H. P. (2010). Complete genome sequence of acidaminococcus fermentans type strain (VR4 T). Standards in Genomic Sciences, 3(1), 1-14. https://doi.org/10.4056/sigs.1002553

Vancouver

Chang YJ, Pukall R, Saunders E, Lapidus A, Copeland A, Nolan M и пр. Complete genome sequence of acidaminococcus fermentans type strain (VR4 T). Standards in Genomic Sciences. 2010;3(1):1-14. https://doi.org/10.4056/sigs.1002553

Author

Chang, Yun Juan ; Pukall, Rüdiger ; Saunders, Elizabeth ; Lapidus, Alla ; Copeland, Alex ; Nolan, Matt ; del Rio, Tijana Glavina ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Detter, John C. ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Pati, Amrita ; Mavromatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Jeffries, Cynthia D. ; Brettin, Thomas ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of acidaminococcus fermentans type strain (VR4 T). в: Standards in Genomic Sciences. 2010 ; Том 3, № 1. стр. 1-14.

BibTeX

@article{f80379724ca24fed916eaf35da7232d7,
title = "Complete genome sequence of acidaminococcus fermentans type strain (VR4 T)",
abstract = "Acidaminococcus fermentans (Rogosa 1969) is the type species of the genus Acidaminococ-cus, and is of phylogenetic interest because of its isolated placement in a genomically little characterized region of the Firmicutes. A. fermentans is known for its habitation of the ga-strointestinal tract and its ability to oxidize trans-aconitate. Its anaerobic fermentation of glu-tamate has been intensively studied and will now be complemented by the genomic basis. The strain described in this report is a nonsporulating, nonmotile, Gram-negative coccus, originally isolated from a pig alimentary tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete ge-nome sequence of a member of the family Acidaminococcaceae, and the 2,329,769 bp long genome with its 2,101 protein-coding and 81 RNA genes is part of the Genomic Encyclope-dia of Bacteria and Archaea project.",
keywords = "Acidaminococcaceae, Anaerobic, Diplococcus, Gastrointestinal tract, GEBA, Glutamate fermentation, Mesophile, Negativicutes, Selenomonadales, Trans-aconitate degrada-tion",
author = "Chang, {Yun Juan} and R{\"u}diger Pukall and Elizabeth Saunders and Alla Lapidus and Alex Copeland and Matt Nolan and {del Rio}, {Tijana Glavina} and Susan Lucas and Feng Chen and Hope Tice and Cheng, {Jan Fang} and Cliff Han and Detter, {John C.} and David Bruce and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Amrita Pati and Konstantinos Mavromatis and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Jeffries, {Cynthia D.} and Thomas Brettin and Manfred Rohde and Markus G{\"o}ker and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
note = "Funding Information: We would like to gratefully acknowledge the help of Gabriele Gehrich-Schr{\"o}ter for growing A. fermentans cultures and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract",
year = "2010",
doi = "10.4056/sigs.1002553",
language = "English",
volume = "3",
pages = "1--14",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "1",

}

RIS

TY - JOUR

T1 - Complete genome sequence of acidaminococcus fermentans type strain (VR4 T)

AU - Chang, Yun Juan

AU - Pukall, Rüdiger

AU - Saunders, Elizabeth

AU - Lapidus, Alla

AU - Copeland, Alex

AU - Nolan, Matt

AU - del Rio, Tijana Glavina

AU - Lucas, Susan

AU - Chen, Feng

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Detter, John C.

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Pati, Amrita

AU - Mavromatis, Konstantinos

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Jeffries, Cynthia D.

AU - Brettin, Thomas

AU - Rohde, Manfred

AU - Göker, Markus

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

N1 - Funding Information: We would like to gratefully acknowledge the help of Gabriele Gehrich-Schröter for growing A. fermentans cultures and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract

PY - 2010

Y1 - 2010

N2 - Acidaminococcus fermentans (Rogosa 1969) is the type species of the genus Acidaminococ-cus, and is of phylogenetic interest because of its isolated placement in a genomically little characterized region of the Firmicutes. A. fermentans is known for its habitation of the ga-strointestinal tract and its ability to oxidize trans-aconitate. Its anaerobic fermentation of glu-tamate has been intensively studied and will now be complemented by the genomic basis. The strain described in this report is a nonsporulating, nonmotile, Gram-negative coccus, originally isolated from a pig alimentary tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete ge-nome sequence of a member of the family Acidaminococcaceae, and the 2,329,769 bp long genome with its 2,101 protein-coding and 81 RNA genes is part of the Genomic Encyclope-dia of Bacteria and Archaea project.

AB - Acidaminococcus fermentans (Rogosa 1969) is the type species of the genus Acidaminococ-cus, and is of phylogenetic interest because of its isolated placement in a genomically little characterized region of the Firmicutes. A. fermentans is known for its habitation of the ga-strointestinal tract and its ability to oxidize trans-aconitate. Its anaerobic fermentation of glu-tamate has been intensively studied and will now be complemented by the genomic basis. The strain described in this report is a nonsporulating, nonmotile, Gram-negative coccus, originally isolated from a pig alimentary tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete ge-nome sequence of a member of the family Acidaminococcaceae, and the 2,329,769 bp long genome with its 2,101 protein-coding and 81 RNA genes is part of the Genomic Encyclope-dia of Bacteria and Archaea project.

KW - Acidaminococcaceae

KW - Anaerobic

KW - Diplococcus

KW - Gastrointestinal tract

KW - GEBA

KW - Glutamate fermentation

KW - Mesophile

KW - Negativicutes

KW - Selenomonadales

KW - Trans-aconitate degrada-tion

UR - http://www.scopus.com/inward/record.url?scp=80053344020&partnerID=8YFLogxK

U2 - 10.4056/sigs.1002553

DO - 10.4056/sigs.1002553

M3 - Article

AN - SCOPUS:80053344020

VL - 3

SP - 1

EP - 14

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 1

ER -

ID: 90013576