DOI

For two strings a, b of lengths m, n respectively, the longest common subsequence (LCS) problem consists in comparing a and b by computing the length of their LCS. In this paper, we define a generalisation, called "the all semi-local LCS problem", where each string is compared against all substrings of the other string, and all prefixes of each string are compared against all suffixes of the other string. An explicit representation of the output lengths is of size Θ((m+n)2). We show that the output can be represented implicitly by a geometric data structure of size O(m + n), allowing efficient queries of the individual output lengths. The currently best all string-substring LCS algorithm by Alves et al. can be adapted to produce the output in this form. We also develop the first all semi-local LCS algorithm, running in time o(mn) when m and n are reasonably close. Compared to a number of previous results, our approach presents an improvement in algorithm functionality, output representation efficiency, and/or running time. © Springer-Verlag Berlin Heidelberg 2006.
Язык оригиналаанглийский
Название основной публикацииComputer Science – Theory and Applications (CSR 2006)
Страницы352-363
Число страниц12
DOI
СостояниеОпубликовано - 1 янв 2006

Серия публикаций

НазваниеLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
ИздательSpringer Nature
Том3967
ISSN (печатное издание)0302-9743

ID: 127757340