The paper is focused on setting up a system of continuous integration within the available infrastructure of MPD Root project. The system's deployment and debugging for MPD Root purposes are considered; the installation and setup of the required tools using GitLab, GitLab CI Runner and Docker are described. The deployment of various MPD Root configurations includes four major steps: installation of environmental components; creation of Root and FairRoot dependencies; building MpdRoot; and MpdRoot testing. The build scripts and the container image configuration were stored in a repository. This allowed to alter the configuration of a build's dependencies without the developer having to directly access GitLab CI Runner service.