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Whole-genome analyses resolve early branches in the tree of life of modern birds. / Jarvis, E.D.; Mirarab, S.; Aberer, A.J.; Li, B.; Houde, P.; Li, C.; Ho, S.Y.W.; Faircloth, B.C.; Nabholz, B.; Howard, J.T.; Suh, A.; Weber, C.C.; Da Fonseca, R.R.; Li, J.; Zhang, F.; Li, H.; Zhou, L.; Narula, N.; Liu, L.; Ganapathy, G.; Boussau, B.; Bayzid, M.S.; Zavidovych, V.; Subramanian, S.; Gabaldón, T.; Capella-Gutiérrez, S.; Huerta-Cepas, J.; Rekepalli, B.; Munch, K.; Schierup, M.; Lindow, B.; Warren, W.C.; Ray, D.; Green, R.E.; Bruford, M.W.; Zhan, X.; Dixon, A.; Li, S.; Li, N.; Huang, Y.; Derryberry, E.P.; Bertelsen, M.F.; Sheldon, F.H.; Brumfield, R.T.; Mello, C.V.; Lovell, P.V.; Wirthlin, M.; Schneider, M.P.C.; Prosdocimi, F.; Samaniego, J.A.; Velazquez, A.M.V.; Alfaro-N ñez, A.; Campos, P.F.; Petersen, B.; Sicheritz-Ponten, T.; Pas, A.; Bailey, T.; Scofield, P.; Bunce, M.; Lambert, D.M.; Zhou, Q.; Perelman, P.; Driskell, A.C.; Shapiro, B.; Xiong, Z.; Zeng, Y.; Liu, S.; Li, Z.; Liu, B.; Wu, K.; Xiao, J.; Yinqi, X.; Zheng, Q.; Zhang, Y.; Yang, H.; Wang, J.; Smeds, L.; Rheindt, F.E.; Braun, M.; Fjeldsa, J.; Orlando, L.; Barker, F.K.; J nsson, K.A.; Johnson, W.; Koepfli, K.-P.; O'Brien, S.; Haussler, D.; Ryder, O.A.; Rahbek, C.; Willerslev, E.; Graves, G.R.; Glenn, T.C.; McCormack, J.; Burt, D.; Ellegren, H.; Alström, P.; Edwards, S.V.; Stamatakis, A.; Mindell, D.P.; Cracraft, J.; Braun, E.L.; Warnow, T.; Jun, W.; Gilbert, M.T.P.; Zhang, G.
In:
Science., No. 6215, 2014, p. 1320-1331.
Research output: Contribution to journal › Article › peer-review
Harvard
Jarvis, ED, Mirarab, S, Aberer, AJ, Li, B, Houde, P, Li, C, Ho, SYW, Faircloth, BC, Nabholz, B, Howard, JT, Suh, A, Weber, CC, Da Fonseca, RR, Li, J, Zhang, F, Li, H, Zhou, L, Narula, N, Liu, L, Ganapathy, G, Boussau, B, Bayzid, MS, Zavidovych, V, Subramanian, S, Gabaldón, T, Capella-Gutiérrez, S, Huerta-Cepas, J, Rekepalli, B, Munch, K, Schierup, M, Lindow, B, Warren, WC, Ray, D, Green, RE, Bruford, MW, Zhan, X, Dixon, A, Li, S, Li, N, Huang, Y, Derryberry, EP, Bertelsen, MF, Sheldon, FH, Brumfield, RT, Mello, CV, Lovell, PV, Wirthlin, M, Schneider, MPC, Prosdocimi, F, Samaniego, JA, Velazquez, AMV, Alfaro-N ñez, A, Campos, PF, Petersen, B, Sicheritz-Ponten, T, Pas, A, Bailey, T, Scofield, P, Bunce, M, Lambert, DM, Zhou, Q, Perelman, P, Driskell, AC, Shapiro, B, Xiong, Z, Zeng, Y, Liu, S, Li, Z, Liu, B, Wu, K, Xiao, J, Yinqi, X, Zheng, Q, Zhang, Y, Yang, H, Wang, J, Smeds, L, Rheindt, FE, Braun, M, Fjeldsa, J, Orlando, L, Barker, FK, J nsson, KA, Johnson, W, Koepfli, K-P
, O'Brien, S, Haussler, D, Ryder, OA, Rahbek, C, Willerslev, E, Graves, GR, Glenn, TC, McCormack, J, Burt, D, Ellegren, H, Alström, P, Edwards, SV, Stamatakis, A, Mindell, DP, Cracraft, J, Braun, EL, Warnow, T, Jun, W, Gilbert, MTP & Zhang, G 2014, '
Whole-genome analyses resolve early branches in the tree of life of modern birds',
Science., no. 6215, pp. 1320-1331.
https://doi.org/10.1126/science.1253451APA
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Da Fonseca, R. R., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., ... Zhang, G. (2014).
Whole-genome analyses resolve early branches in the tree of life of modern birds.
Science., (6215), 1320-1331.
https://doi.org/10.1126/science.1253451Vancouver
Author
Jarvis, E.D. ; Mirarab, S. ; Aberer, A.J. ; Li, B. ; Houde, P. ; Li, C. ; Ho, S.Y.W. ; Faircloth, B.C. ; Nabholz, B. ; Howard, J.T. ; Suh, A. ; Weber, C.C. ; Da Fonseca, R.R. ; Li, J. ; Zhang, F. ; Li, H. ; Zhou, L. ; Narula, N. ; Liu, L. ; Ganapathy, G. ; Boussau, B. ; Bayzid, M.S. ; Zavidovych, V. ; Subramanian, S. ; Gabaldón, T. ; Capella-Gutiérrez, S. ; Huerta-Cepas, J. ; Rekepalli, B. ; Munch, K. ; Schierup, M. ; Lindow, B. ; Warren, W.C. ; Ray, D. ; Green, R.E. ; Bruford, M.W. ; Zhan, X. ; Dixon, A. ; Li, S. ; Li, N. ; Huang, Y. ; Derryberry, E.P. ; Bertelsen, M.F. ; Sheldon, F.H. ; Brumfield, R.T. ; Mello, C.V. ; Lovell, P.V. ; Wirthlin, M. ; Schneider, M.P.C. ; Prosdocimi, F. ; Samaniego, J.A. ; Velazquez, A.M.V. ; Alfaro-N ñez, A. ; Campos, P.F. ; Petersen, B. ; Sicheritz-Ponten, T. ; Pas, A. ; Bailey, T. ; Scofield, P. ; Bunce, M. ; Lambert, D.M. ; Zhou, Q. ; Perelman, P. ; Driskell, A.C. ; Shapiro, B. ; Xiong, Z. ; Zeng, Y. ; Liu, S. ; Li, Z. ; Liu, B. ; Wu, K. ; Xiao, J. ; Yinqi, X. ; Zheng, Q. ; Zhang, Y. ; Yang, H. ; Wang, J. ; Smeds, L. ; Rheindt, F.E. ; Braun, M. ; Fjeldsa, J. ; Orlando, L. ; Barker, F.K. ; J nsson, K.A. ; Johnson, W. ; Koepfli, K.-P.
; O'Brien, S. ; Haussler, D. ; Ryder, O.A. ; Rahbek, C. ; Willerslev, E. ; Graves, G.R. ; Glenn, T.C. ; McCormack, J. ; Burt, D. ; Ellegren, H. ; Alström, P. ; Edwards, S.V. ; Stamatakis, A. ; Mindell, D.P. ; Cracraft, J. ; Braun, E.L. ; Warnow, T. ; Jun, W. ; Gilbert, M.T.P. ; Zhang, G. /
Whole-genome analyses resolve early branches in the tree of life of modern birds. In:
Science. 2014 ; No. 6215. pp. 1320-1331.
BibTeX
@article{0d5f5a589c974809a3289e488235354d,
title = "Whole-genome analyses resolve early branches in the tree of life of modern birds",
abstract = "To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data.We recovered a highly resolved tree that confirms previously controversial sister or close relationships.We identified the first divergence in Neoaves, two groups we named Passerea and Columbea, representing independent lineages of diverse and convergently evolved land and water bird species. Among Passerea, we infer the common ancestor of core landbirds to have been an apex predator and confirm independent gains of vocal learning. Among Columbea, we identify pigeons and flamingoes as belonging to sister clades. Even with whole genomes, some of the earliest branches in Neoaves proved challenging to resolve, which was best explained by massive protein-coding sequence convergence and high levels of incomplete lineage sorting that occurred during a rapid radiation after the Cretaceous-Paleogene mass extin",
author = "E.D. Jarvis and S. Mirarab and A.J. Aberer and B. Li and P. Houde and C. Li and S.Y.W. Ho and B.C. Faircloth and B. Nabholz and J.T. Howard and A. Suh and C.C. Weber and {Da Fonseca}, R.R. and J. Li and F. Zhang and H. Li and L. Zhou and N. Narula and L. Liu and G. Ganapathy and B. Boussau and M.S. Bayzid and V. Zavidovych and S. Subramanian and T. Gabald{\'o}n and S. Capella-Guti{\'e}rrez and J. Huerta-Cepas and B. Rekepalli and K. Munch and M. Schierup and B. Lindow and W.C. Warren and D. Ray and R.E. Green and M.W. Bruford and X. Zhan and A. Dixon and S. Li and N. Li and Y. Huang and E.P. Derryberry and M.F. Bertelsen and F.H. Sheldon and R.T. Brumfield and C.V. Mello and P.V. Lovell and M. Wirthlin and M.P.C. Schneider and F. Prosdocimi and J.A. Samaniego and A.M.V. Velazquez and {Alfaro-N {\~n}ez}, A. and P.F. Campos and B. Petersen and T. Sicheritz-Ponten and A. Pas and T. Bailey and P. Scofield and M. Bunce and D.M. Lambert and Q. Zhou and P. Perelman and A.C. Driskell and B. Shapiro and Z. Xiong and Y. Zeng and S. Liu and Z. Li and B. Liu and K. Wu and J. Xiao and X. Yinqi and Q. Zheng and Y. Zhang and H. Yang and J. Wang and L. Smeds and F.E. Rheindt and M. Braun and J. Fjeldsa and L. Orlando and F.K. Barker and {J nsson}, K.A. and W. Johnson and K.-P. Koepfli and S. O'Brien and D. Haussler and O.A. Ryder and C. Rahbek and E. Willerslev and G.R. Graves and T.C. Glenn and J. McCormack and D. Burt and H. Ellegren and P. Alstr{\"o}m and S.V. Edwards and A. Stamatakis and D.P. Mindell and J. Cracraft and E.L. Braun and T. Warnow and W. Jun and M.T.P. Gilbert and G. Zhang",
year = "2014",
doi = "10.1126/science.1253451",
language = "English",
pages = "1320--1331",
journal = "Science",
issn = "0036-8075",
publisher = "American Association for the Advancement of Science",
number = "6215",
}
RIS
TY - JOUR
T1 - Whole-genome analyses resolve early branches in the tree of life of modern birds
AU - Jarvis, E.D.
AU - Mirarab, S.
AU - Aberer, A.J.
AU - Li, B.
AU - Houde, P.
AU - Li, C.
AU - Ho, S.Y.W.
AU - Faircloth, B.C.
AU - Nabholz, B.
AU - Howard, J.T.
AU - Suh, A.
AU - Weber, C.C.
AU - Da Fonseca, R.R.
AU - Li, J.
AU - Zhang, F.
AU - Li, H.
AU - Zhou, L.
AU - Narula, N.
AU - Liu, L.
AU - Ganapathy, G.
AU - Boussau, B.
AU - Bayzid, M.S.
AU - Zavidovych, V.
AU - Subramanian, S.
AU - Gabaldón, T.
AU - Capella-Gutiérrez, S.
AU - Huerta-Cepas, J.
AU - Rekepalli, B.
AU - Munch, K.
AU - Schierup, M.
AU - Lindow, B.
AU - Warren, W.C.
AU - Ray, D.
AU - Green, R.E.
AU - Bruford, M.W.
AU - Zhan, X.
AU - Dixon, A.
AU - Li, S.
AU - Li, N.
AU - Huang, Y.
AU - Derryberry, E.P.
AU - Bertelsen, M.F.
AU - Sheldon, F.H.
AU - Brumfield, R.T.
AU - Mello, C.V.
AU - Lovell, P.V.
AU - Wirthlin, M.
AU - Schneider, M.P.C.
AU - Prosdocimi, F.
AU - Samaniego, J.A.
AU - Velazquez, A.M.V.
AU - Alfaro-N ñez, A.
AU - Campos, P.F.
AU - Petersen, B.
AU - Sicheritz-Ponten, T.
AU - Pas, A.
AU - Bailey, T.
AU - Scofield, P.
AU - Bunce, M.
AU - Lambert, D.M.
AU - Zhou, Q.
AU - Perelman, P.
AU - Driskell, A.C.
AU - Shapiro, B.
AU - Xiong, Z.
AU - Zeng, Y.
AU - Liu, S.
AU - Li, Z.
AU - Liu, B.
AU - Wu, K.
AU - Xiao, J.
AU - Yinqi, X.
AU - Zheng, Q.
AU - Zhang, Y.
AU - Yang, H.
AU - Wang, J.
AU - Smeds, L.
AU - Rheindt, F.E.
AU - Braun, M.
AU - Fjeldsa, J.
AU - Orlando, L.
AU - Barker, F.K.
AU - J nsson, K.A.
AU - Johnson, W.
AU - Koepfli, K.-P.
AU - O'Brien, S.
AU - Haussler, D.
AU - Ryder, O.A.
AU - Rahbek, C.
AU - Willerslev, E.
AU - Graves, G.R.
AU - Glenn, T.C.
AU - McCormack, J.
AU - Burt, D.
AU - Ellegren, H.
AU - Alström, P.
AU - Edwards, S.V.
AU - Stamatakis, A.
AU - Mindell, D.P.
AU - Cracraft, J.
AU - Braun, E.L.
AU - Warnow, T.
AU - Jun, W.
AU - Gilbert, M.T.P.
AU - Zhang, G.
PY - 2014
Y1 - 2014
N2 - To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data.We recovered a highly resolved tree that confirms previously controversial sister or close relationships.We identified the first divergence in Neoaves, two groups we named Passerea and Columbea, representing independent lineages of diverse and convergently evolved land and water bird species. Among Passerea, we infer the common ancestor of core landbirds to have been an apex predator and confirm independent gains of vocal learning. Among Columbea, we identify pigeons and flamingoes as belonging to sister clades. Even with whole genomes, some of the earliest branches in Neoaves proved challenging to resolve, which was best explained by massive protein-coding sequence convergence and high levels of incomplete lineage sorting that occurred during a rapid radiation after the Cretaceous-Paleogene mass extin
AB - To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data.We recovered a highly resolved tree that confirms previously controversial sister or close relationships.We identified the first divergence in Neoaves, two groups we named Passerea and Columbea, representing independent lineages of diverse and convergently evolved land and water bird species. Among Passerea, we infer the common ancestor of core landbirds to have been an apex predator and confirm independent gains of vocal learning. Among Columbea, we identify pigeons and flamingoes as belonging to sister clades. Even with whole genomes, some of the earliest branches in Neoaves proved challenging to resolve, which was best explained by massive protein-coding sequence convergence and high levels of incomplete lineage sorting that occurred during a rapid radiation after the Cretaceous-Paleogene mass extin
U2 - 10.1126/science.1253451
DO - 10.1126/science.1253451
M3 - Article
SP - 1320
EP - 1331
JO - Science
JF - Science
SN - 0036-8075
IS - 6215
ER -
