DOI

  • А.А. Проскурякова
  • Екатерина Иванова
  • Светлана Анатольевна Галкина
  • Виолетта Беклемишева
  • Мария Михайловна Кулак
  • Наталья Сердюкова
  • Владимир Юдкин
  • Rebecca E O'Connor
  • Daren K Griffin
  • Александр Сергеевич Графодатский
Introduction: The Phasianidae family belongs to Galliformes, which is basal to other Neognathae. Despite the availability of chromosome-level genome assemblies for many Phasianidae species, the karyotypes for some species remain poorly investigated. Methods: In this study, we described karyotypes using classical, differential, and molecular cytogenetic (BAC-FISH) methods. To compare chromosome-level genomes of 10 Galliformes species dot-plot analysis was performed. Results: We provide the first comprehensive description of the karyotype of two Tetraonini species: the western capercaillie (Tetrao urogallus, 2n = 78) and the hazel grouse (Tetrastes bonasia, 2n = 80). We mapped chicken BAC clones (CHORI-261) with known coordinates to the chromosomes of the western capercaillie and Japanese quail (Coturnix japonica, 2n = 78) to anchor physical chromosomes to chromosome-level assemblies. Finally, we performed dot-plot comparisons of ten available chromosome-level genome assemblies to identify interand intrachromosomal rearrangements in Galliformes. Conclusion: We show that the centromeric fusion of orthologs of GGA6 and GGA8 is shared by all analyzed species in the tetraonid clade: T. urogallus, T. bonasia, and Lagopus muta. We identified linage-specific intrachromosomal rearrangements on chromosomes orthologs to chicken Z (Phasianinae and Tetraoninae), 7 and 12 (Phasianinae and Tetraoninae), 5 and 13 (Perdicinae), 22 (Alectoris). Our study shows that analysis of the genomes of several closely related species allows us to identify chromosomal rearrangements characteristic of individual evolutionary lines.
Original languageEnglish
JournalCytogenetic and Genome Research
DOIs
StateE-pub ahead of print - 11 Mar 2025

    Research areas

  • Bacterial artificial chromosomes, Coturnix japonica, Dot plots, Tetrao urogallus, Tetrastes bonasia

ID: 135917662