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The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. / Scott, Kathleen M.; Sievert, Stefan M.; Abril, Fereniki N.; Ball, Lois A.; Barrett, Chantell J.; Blake, Rodrigo A.; Boller, Amanda J.; Chain, Patrick S.G.; Clark, Justine A.; Davis, Carisa R.; Detter, Chris; Do, Kimberly F.; Dobrinski, Kimberly P.; Faza, Brandon I.; Fitzpatrick, Kelly A.; Freyermuth, Sharyn K.; Harmer, Tara L.; Hauser, Loren J.; Hügler, Michael; Kerfeld, Cheryl A.; Klotz, Martin G.; Kong, William W.; Land, Miriam; Lapidus, Alla; Larimer, Frank W.; Longo, Dana L.; Lucas, Susan; Malfatti, Stephanie A.; Massey, Steven E.; Martin, Darlene D.; McCuddin, Zoe; Meyer, Folker; Moore, Jessica L.; Ocampo, Luis H.; Paul, John H.; Paulsen, Ian T.; Reep, Douglas K.; Ren, Qinghu; Ross, Rachel L.; Sato, Priscila Y.; Thomas, Phaedra; Tinkham, Lance E.; Zeruth, Gary T.

In: PLoS Biology, Vol. 4, No. 12, 12.2006, p. 2196-2212.

Research output: Contribution to journal › Article › peer-review

Harvard

Scott, KM, Sievert, SM, Abril, FN, Ball, LA, Barrett, CJ, Blake, RA, Boller, AJ, Chain, PSG, Clark, JA, Davis, CR, Detter, C, Do, KF, Dobrinski, KP, Faza, BI, Fitzpatrick, KA, Freyermuth, SK, Harmer, TL, Hauser, LJ, Hügler, M, Kerfeld, CA, Klotz, MG, Kong, WW, Land, M, Lapidus, A, Larimer, FW, Longo, DL, Lucas, S, Malfatti, SA, Massey, SE, Martin, DD, McCuddin, Z, Meyer, F, Moore, JL, Ocampo, LH, Paul, JH, Paulsen, IT, Reep, DK, Ren, Q, Ross, RL, Sato, PY, Thomas, P, Tinkham, LE & Zeruth, GT 2006, 'The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2', PLoS Biology, vol. 4, no. 12, pp. 2196-2212. https://doi.org/10.1371/journal.pbio.0040383

APA

Scott, K. M., Sievert, S. M., Abril, F. N., Ball, L. A., Barrett, C. J., Blake, R. A., Boller, A. J., Chain, P. S. G., Clark, J. A., Davis, C. R., Detter, C., Do, K. F., Dobrinski, K. P., Faza, B. I., Fitzpatrick, K. A., Freyermuth, S. K., Harmer, T. L., Hauser, L. J., Hügler, M., ... Zeruth, G. T. (2006). The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. PLoS Biology, 4(12), 2196-2212. https://doi.org/10.1371/journal.pbio.0040383

Vancouver

Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA et al. The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. PLoS Biology. 2006 Dec;4(12):2196-2212. https://doi.org/10.1371/journal.pbio.0040383

Author

Scott, Kathleen M. ; Sievert, Stefan M. ; Abril, Fereniki N. ; Ball, Lois A. ; Barrett, Chantell J. ; Blake, Rodrigo A. ; Boller, Amanda J. ; Chain, Patrick S.G. ; Clark, Justine A. ; Davis, Carisa R. ; Detter, Chris ; Do, Kimberly F. ; Dobrinski, Kimberly P. ; Faza, Brandon I. ; Fitzpatrick, Kelly A. ; Freyermuth, Sharyn K. ; Harmer, Tara L. ; Hauser, Loren J. ; Hügler, Michael ; Kerfeld, Cheryl A. ; Klotz, Martin G. ; Kong, William W. ; Land, Miriam ; Lapidus, Alla ; Larimer, Frank W. ; Longo, Dana L. ; Lucas, Susan ; Malfatti, Stephanie A. ; Massey, Steven E. ; Martin, Darlene D. ; McCuddin, Zoe ; Meyer, Folker ; Moore, Jessica L. ; Ocampo, Luis H. ; Paul, John H. ; Paulsen, Ian T. ; Reep, Douglas K. ; Ren, Qinghu ; Ross, Rachel L. ; Sato, Priscila Y. ; Thomas, Phaedra ; Tinkham, Lance E. ; Zeruth, Gary T. / The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. In: PLoS Biology. 2006 ; Vol. 4, No. 12. pp. 2196-2212.

BibTeX

@article{5d341f424b88407c8aec97bee2473f6a,
title = "The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2",
abstract = "Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal vents. This gammaproteobacterium has a single chromosome (2,427,734 base pairs), and its genome illustrates many of the adaptations that have enabled it to thrive at vents globally. It has 14 methyl-accepting chemotaxis protein genes, including four that may assist in positioning it in the redoxcline. A relative abundance of coding sequences (CDSs) encoding regulatory proteins likely control the expression of genes encoding carboxysomes, multiple dissolved inorganic nitrogen and phosphate transporters, as well as a phosphonate operon, which provide this species with a variety of options for acquiring these substrates from the environment. Thiom. crunogena XCL-2 is unusual among obligate sulfur-oxidizing bacteria in relying on the Sox system for the oxidation of reduced sulfur compounds. The genome has characteristics consistent with an obligately chemolithoautotrophic lifestyle, including few transporters predicted to have organic allocrits, and Calvin-Benson-Bassham cycle CDSs scattered throughout the genome.",
author = "Scott, {Kathleen M.} and Sievert, {Stefan M.} and Abril, {Fereniki N.} and Ball, {Lois A.} and Barrett, {Chantell J.} and Blake, {Rodrigo A.} and Boller, {Amanda J.} and Chain, {Patrick S.G.} and Clark, {Justine A.} and Davis, {Carisa R.} and Chris Detter and Do, {Kimberly F.} and Dobrinski, {Kimberly P.} and Faza, {Brandon I.} and Fitzpatrick, {Kelly A.} and Freyermuth, {Sharyn K.} and Harmer, {Tara L.} and Hauser, {Loren J.} and Michael H{\"u}gler and Kerfeld, {Cheryl A.} and Klotz, {Martin G.} and Kong, {William W.} and Miriam Land and Alla Lapidus and Larimer, {Frank W.} and Longo, {Dana L.} and Susan Lucas and Malfatti, {Stephanie A.} and Massey, {Steven E.} and Martin, {Darlene D.} and Zoe McCuddin and Folker Meyer and Moore, {Jessica L.} and Ocampo, {Luis H.} and Paul, {John H.} and Paulsen, {Ian T.} and Reep, {Douglas K.} and Qinghu Ren and Ross, {Rachel L.} and Sato, {Priscila Y.} and Phaedra Thomas and Tinkham, {Lance E.} and Zeruth, {Gary T.}",
year = "2006",
month = dec,
doi = "10.1371/journal.pbio.0040383",
language = "English",
volume = "4",
pages = "2196--2212",
journal = "PLoS Biology",
issn = "1544-9173",
publisher = "Public Library of Science",
number = "12",

}

RIS

TY - JOUR

T1 - The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2

AU - Scott, Kathleen M.

AU - Sievert, Stefan M.

AU - Abril, Fereniki N.

AU - Ball, Lois A.

AU - Barrett, Chantell J.

AU - Blake, Rodrigo A.

AU - Boller, Amanda J.

AU - Chain, Patrick S.G.

AU - Clark, Justine A.

AU - Davis, Carisa R.

AU - Detter, Chris

AU - Do, Kimberly F.

AU - Dobrinski, Kimberly P.

AU - Faza, Brandon I.

AU - Fitzpatrick, Kelly A.

AU - Freyermuth, Sharyn K.

AU - Harmer, Tara L.

AU - Hauser, Loren J.

AU - Hügler, Michael

AU - Kerfeld, Cheryl A.

AU - Klotz, Martin G.

AU - Kong, William W.

AU - Land, Miriam

AU - Lapidus, Alla

AU - Larimer, Frank W.

AU - Longo, Dana L.

AU - Lucas, Susan

AU - Malfatti, Stephanie A.

AU - Massey, Steven E.

AU - Martin, Darlene D.

AU - McCuddin, Zoe

AU - Meyer, Folker

AU - Moore, Jessica L.

AU - Ocampo, Luis H.

AU - Paul, John H.

AU - Paulsen, Ian T.

AU - Reep, Douglas K.

AU - Ren, Qinghu

AU - Ross, Rachel L.

AU - Sato, Priscila Y.

AU - Thomas, Phaedra

AU - Tinkham, Lance E.

AU - Zeruth, Gary T.

PY - 2006/12

Y1 - 2006/12

N2 - Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal vents. This gammaproteobacterium has a single chromosome (2,427,734 base pairs), and its genome illustrates many of the adaptations that have enabled it to thrive at vents globally. It has 14 methyl-accepting chemotaxis protein genes, including four that may assist in positioning it in the redoxcline. A relative abundance of coding sequences (CDSs) encoding regulatory proteins likely control the expression of genes encoding carboxysomes, multiple dissolved inorganic nitrogen and phosphate transporters, as well as a phosphonate operon, which provide this species with a variety of options for acquiring these substrates from the environment. Thiom. crunogena XCL-2 is unusual among obligate sulfur-oxidizing bacteria in relying on the Sox system for the oxidation of reduced sulfur compounds. The genome has characteristics consistent with an obligately chemolithoautotrophic lifestyle, including few transporters predicted to have organic allocrits, and Calvin-Benson-Bassham cycle CDSs scattered throughout the genome.

AB - Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal vents. This gammaproteobacterium has a single chromosome (2,427,734 base pairs), and its genome illustrates many of the adaptations that have enabled it to thrive at vents globally. It has 14 methyl-accepting chemotaxis protein genes, including four that may assist in positioning it in the redoxcline. A relative abundance of coding sequences (CDSs) encoding regulatory proteins likely control the expression of genes encoding carboxysomes, multiple dissolved inorganic nitrogen and phosphate transporters, as well as a phosphonate operon, which provide this species with a variety of options for acquiring these substrates from the environment. Thiom. crunogena XCL-2 is unusual among obligate sulfur-oxidizing bacteria in relying on the Sox system for the oxidation of reduced sulfur compounds. The genome has characteristics consistent with an obligately chemolithoautotrophic lifestyle, including few transporters predicted to have organic allocrits, and Calvin-Benson-Bassham cycle CDSs scattered throughout the genome.

UR - http://www.scopus.com/inward/record.url?scp=33845505324&partnerID=8YFLogxK

U2 - 10.1371/journal.pbio.0040383

DO - 10.1371/journal.pbio.0040383

M3 - Article

C2 - 17105352

AN - SCOPUS:33845505324

VL - 4

SP - 2196

EP - 2212

JO - PLoS Biology

JF - PLoS Biology

SN - 1544-9173

IS - 12

ER -

ID: 90037635