The European flounder, Platichthys flesus, is a polymorphic flatfish, which has a large population variation in the proportion of left-sided and right-sided morphs across its geographic range. We compared the frequencies of these morphs in the White Sea (Kandalaksha, Onega, Dvina, and Mezen bays), the region in the northeastern part of species’ range adjacent to the Arctic. The proportion of the two morphs in the populations of White Sea flounders showed high variability and specific regional characteristics. The highest frequency of left-sided individuals was observed in the northwestern (Kandalaksha Bay) and southwestern (Onega Bay) parts of the White Sea. Flounders living in the eastern part of the White Sea (Dvina and Mezen bays) showed a much lower frequency of this trait. No consistent pattern of geographic variation in the proportion of the morphs was found in the geographic range of P. flesus. The lowest frequencies of left-sided individuals were recorded in the flounder populations living at the eastern and western margins of the geographic range. Geographic variation in the proportion of left-sided individuals in flounder populations is likely to be determined by a set of biotic and abiotic factors. Selective influence of the latter, acting through the trophic relationships of this species with other marine organisms, can differ in different parts of flounder’s geographic range.