Standard

RnaQUAST: A quality assessment tool for de novo transcriptome assemblies. / Bushmanova, E.; Antipov, D.; Lapidus, A.; Suvorov, V.; Prjibelski, A. D.

In: Bioinformatics, Vol. 32, No. 14, 15.07.2016, p. 2210-2212.

Research output: Contribution to journal › Article › peer-review

Harvard

Bushmanova, E, Antipov, D, Lapidus, A, Suvorov, V & Prjibelski, AD 2016, 'RnaQUAST: A quality assessment tool for de novo transcriptome assemblies', Bioinformatics, vol. 32, no. 14, pp. 2210-2212. https://doi.org/10.1093/bioinformatics/btw218, https://doi.org/10.1093/bioinformatics/btw218

APA

Bushmanova, E., Antipov, D., Lapidus, A., Suvorov, V., & Prjibelski, A. D. (2016). RnaQUAST: A quality assessment tool for de novo transcriptome assemblies. Bioinformatics, 32(14), 2210-2212. https://doi.org/10.1093/bioinformatics/btw218, https://doi.org/10.1093/bioinformatics/btw218

Vancouver

Bushmanova E, Antipov D, Lapidus A, Suvorov V, Prjibelski AD. RnaQUAST: A quality assessment tool for de novo transcriptome assemblies. Bioinformatics. 2016 Jul 15;32(14):2210-2212. https://doi.org/10.1093/bioinformatics/btw218, https://doi.org/10.1093/bioinformatics/btw218

Author

Bushmanova, E. ; Antipov, D. ; Lapidus, A. ; Suvorov, V. ; Prjibelski, A. D. / RnaQUAST: A quality assessment tool for de novo transcriptome assemblies. In: Bioinformatics. 2016 ; Vol. 32, No. 14. pp. 2210-2212.

BibTeX

@article{5eb396f4edad47b0bd395bbd0d8a40a8,
title = "RnaQUAST: A quality assessment tool for de novo transcriptome assemblies",
abstract = "Ability to generate large RNA-Seq data sets created a demand for both de novo and reference-based transcriptome assemblers. However, while many transcriptome assemblers are now available, there is still no unified quality assessment tool for RNA-Seq assemblies. We present rnaQUAST -- a tool for evaluating RNA-Seq assembly quality and benchmarking transcriptome assemblers using reference genome and gene database. rnaQUAST calculates various metrics that demonstrate completeness and correctness levels of the assembled transcripts, and outputs them in a user-friendly report. Availability and implementation: rnaQUAST is implemented in Python and is freely available at http://bioinf.spbau.ru/en/rnaquast. Keywords: RNA-Seq, transcriptome assembly, quality assessment. Contact: ap@bioinf.spbau.ru Supplementary material: To be posted online.",
author = "E. Bushmanova and D. Antipov and A. Lapidus and V. Suvorov and Prjibelski, {A. D.}",
year = "2016",
month = jul,
day = "15",
doi = "10.1093/bioinformatics/btw218",
language = "English",
volume = "32",
pages = "2210--2212",
journal = "Bioinformatics",
issn = "1367-4803",
publisher = "Oxford University Press",
number = "14",

}

RIS

TY - JOUR

T1 - RnaQUAST: A quality assessment tool for de novo transcriptome assemblies

AU - Bushmanova, E.

AU - Antipov, D.

AU - Lapidus, A.

AU - Suvorov, V.

AU - Prjibelski, A. D.

PY - 2016/7/15

Y1 - 2016/7/15

N2 - Ability to generate large RNA-Seq data sets created a demand for both de novo and reference-based transcriptome assemblers. However, while many transcriptome assemblers are now available, there is still no unified quality assessment tool for RNA-Seq assemblies. We present rnaQUAST -- a tool for evaluating RNA-Seq assembly quality and benchmarking transcriptome assemblers using reference genome and gene database. rnaQUAST calculates various metrics that demonstrate completeness and correctness levels of the assembled transcripts, and outputs them in a user-friendly report. Availability and implementation: rnaQUAST is implemented in Python and is freely available at http://bioinf.spbau.ru/en/rnaquast. Keywords: RNA-Seq, transcriptome assembly, quality assessment. Contact: ap@bioinf.spbau.ru Supplementary material: To be posted online.

AB - Ability to generate large RNA-Seq data sets created a demand for both de novo and reference-based transcriptome assemblers. However, while many transcriptome assemblers are now available, there is still no unified quality assessment tool for RNA-Seq assemblies. We present rnaQUAST -- a tool for evaluating RNA-Seq assembly quality and benchmarking transcriptome assemblers using reference genome and gene database. rnaQUAST calculates various metrics that demonstrate completeness and correctness levels of the assembled transcripts, and outputs them in a user-friendly report. Availability and implementation: rnaQUAST is implemented in Python and is freely available at http://bioinf.spbau.ru/en/rnaquast. Keywords: RNA-Seq, transcriptome assembly, quality assessment. Contact: ap@bioinf.spbau.ru Supplementary material: To be posted online.

UR - http://www.mendeley.com/research/rnaquast-quality-assessment-tool-novo-transcriptome-assemblies

U2 - 10.1093/bioinformatics/btw218

DO - 10.1093/bioinformatics/btw218

M3 - Article

C2 - 27153654

VL - 32

SP - 2210

EP - 2212

JO - Bioinformatics

JF - Bioinformatics

SN - 1367-4803

IS - 14

ER -

ID: 7608201