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PlasmidSPAdes: Assembling plasmids from whole genome sequencing data. / Antipov, D.; Hartwick, N.; Shen, M.; Raiko, M.; Lapidus, A.; Pevzner, P. A.

In: Bioinformatics, Vol. 32, No. 22, 15.11.2016, p. 3380-3387.

Research output: Contribution to journal › Article › peer-review

Harvard

Antipov, D, Hartwick, N, Shen, M, Raiko, M, Lapidus, A & Pevzner, PA 2016, 'PlasmidSPAdes: Assembling plasmids from whole genome sequencing data', Bioinformatics, vol. 32, no. 22, pp. 3380-3387. https://doi.org/10.1093/bioinformatics/btw493, https://doi.org/10.1093/bioinformatics/btw493

APA

Antipov, D., Hartwick, N., Shen, M., Raiko, M., Lapidus, A., & Pevzner, P. A. (2016). PlasmidSPAdes: Assembling plasmids from whole genome sequencing data. Bioinformatics, 32(22), 3380-3387. https://doi.org/10.1093/bioinformatics/btw493, https://doi.org/10.1093/bioinformatics/btw493

Vancouver

Antipov D, Hartwick N, Shen M, Raiko M, Lapidus A, Pevzner PA. PlasmidSPAdes: Assembling plasmids from whole genome sequencing data. Bioinformatics. 2016 Nov 15;32(22):3380-3387. https://doi.org/10.1093/bioinformatics/btw493, https://doi.org/10.1093/bioinformatics/btw493

Author

Antipov, D. ; Hartwick, N. ; Shen, M. ; Raiko, M. ; Lapidus, A. ; Pevzner, P. A. / PlasmidSPAdes: Assembling plasmids from whole genome sequencing data. In: Bioinformatics. 2016 ; Vol. 32, No. 22. pp. 3380-3387.

BibTeX

@article{0e18108ae8fe4c3c9d4b825092928c9d,
title = "PlasmidSPAdes: Assembling plasmids from whole genome sequencing data",
abstract = "Motivation: Plasmids are stably maintained extra-chromosomal ge- netic elements that replicate independently from the host cell{\textquoteright}s chro- mosomes. Although plasmids harbor biomedically important genes, (such as genes involved in virulence and antibiotics resistance), there is a shortage of specialized software tools for extracting and assembling plasmid data from whole genome sequencing projects. Results:We present the plasmidSPAdes algorithm and software tool for assembling plasmids from whole genome sequencing data and benchmark its performance on a diverse set of bacterial genomes",
author = "D. Antipov and N. Hartwick and M. Shen and M. Raiko and A. Lapidus and Pevzner, {P. A.}",
year = "2016",
month = nov,
day = "15",
doi = "10.1093/bioinformatics/btw493",
language = "English",
volume = "32",
pages = "3380--3387",
journal = "Bioinformatics",
issn = "1367-4803",
publisher = "Oxford University Press",
number = "22",

}

RIS

TY - JOUR

T1 - PlasmidSPAdes: Assembling plasmids from whole genome sequencing data

AU - Antipov, D.

AU - Hartwick, N.

AU - Shen, M.

AU - Raiko, M.

AU - Lapidus, A.

AU - Pevzner, P. A.

PY - 2016/11/15

Y1 - 2016/11/15

N2 - Motivation: Plasmids are stably maintained extra-chromosomal ge- netic elements that replicate independently from the host cell’s chro- mosomes. Although plasmids harbor biomedically important genes, (such as genes involved in virulence and antibiotics resistance), there is a shortage of specialized software tools for extracting and assembling plasmid data from whole genome sequencing projects. Results:We present the plasmidSPAdes algorithm and software tool for assembling plasmids from whole genome sequencing data and benchmark its performance on a diverse set of bacterial genomes

AB - Motivation: Plasmids are stably maintained extra-chromosomal ge- netic elements that replicate independently from the host cell’s chro- mosomes. Although plasmids harbor biomedically important genes, (such as genes involved in virulence and antibiotics resistance), there is a shortage of specialized software tools for extracting and assembling plasmid data from whole genome sequencing projects. Results:We present the plasmidSPAdes algorithm and software tool for assembling plasmids from whole genome sequencing data and benchmark its performance on a diverse set of bacterial genomes

UR - http://www.mendeley.com/research/plasmidspades-assembling-plasmids-whole-genome-sequencing-data

U2 - 10.1093/bioinformatics/btw493

DO - 10.1093/bioinformatics/btw493

M3 - Article

C2 - 27466620

VL - 32

SP - 3380

EP - 3387

JO - Bioinformatics

JF - Bioinformatics

SN - 1367-4803

IS - 22

ER -

ID: 7608307