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In the Shortest Superstring problem we are given a set of strings S= { s1, … , sn} and integer ℓ and the question is to decide whether there is a superstring s of length at most ℓ containing all strings of S as substrings. We obtain several parameterized algorithms and complexity results for this problem. In particular, we give an algorithm which in time 2 O ( k )poly (n) finds a superstring of length at most ℓ containing at least k strings of S. We complement this by a lower bound showing that such a parameterization does not admit a polynomial kernel up to some complexity assumption. We also obtain several results about “below guaranteed values” parameterization of the problem. We show that parameterization by compression admits a polynomial kernel while parameterization “below matching” is hard.
Original language | English |
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Pages (from-to) | 798-813 |
Number of pages | 16 |
Journal | Algorithmica |
Volume | 79 |
Issue number | 3 |
DOIs | |
State | Published - 1 Nov 2017 |
ID: 49820985