TY - JOUR

T1 - Outcome Comparison of SpCas9- and LbCas12a-Mediated DNA Editing in Zebrafish Embryos

AU - Meshalkina, Daria A.

AU - Glushchenko, Aleksei S.

AU - Kysil, Elana V.

AU - Mizgirev, Igor V.

AU - Frolov, Andrej

PY - 2020

Y1 - 2020

N2 - CRISPR/Cas genome editing is a widely used research technology. Its simplest variant is gene knockout resulting from reparation errors after introduction of dsDNA breaks by Cas nuclease. We compared the outcomes of the break repair by two commonly used nucleases (SpCas9 and LbCas12a) in zebrafish embryos to reveal if application of one nuclease is advantageous in comparison to the other. To address this question, we injected ribonucleoprotein complexes of nucleases and corresponding guide RNAs in zebrafish zygotes and three days later sequenced the target gene regions. We found that LbCas12a breaks resulted in longer deletions and more rare inserts, in comparison to those generated by SpCas9, while the editing efficiencies of both nucleases were the same. On the other hand, overlapping protospacers were shown to lead to similarities in repair outcome, although they were cut by two different nucleases. Thus, our results indicate that the repair outcome depends both on the nuclease mode of action and on protospacer sequence.

AB - CRISPR/Cas genome editing is a widely used research technology. Its simplest variant is gene knockout resulting from reparation errors after introduction of dsDNA breaks by Cas nuclease. We compared the outcomes of the break repair by two commonly used nucleases (SpCas9 and LbCas12a) in zebrafish embryos to reveal if application of one nuclease is advantageous in comparison to the other. To address this question, we injected ribonucleoprotein complexes of nucleases and corresponding guide RNAs in zebrafish zygotes and three days later sequenced the target gene regions. We found that LbCas12a breaks resulted in longer deletions and more rare inserts, in comparison to those generated by SpCas9, while the editing efficiencies of both nucleases were the same. On the other hand, overlapping protospacers were shown to lead to similarities in repair outcome, although they were cut by two different nucleases. Thus, our results indicate that the repair outcome depends both on the nuclease mode of action and on protospacer sequence.

KW - Cas9

KW - Cas12a

KW - Cpf1

KW - Zebrafish

KW - gene knockout

KW - Repair outcome

UR - https://www.researchgate.net/publication/341419357_Outcomes_Comparison_of_SpCas9-_and_LbCas12a-mediated_DNA_Editing_in_Zebrafish_Embryos

M3 - Article

VL - 11

JO - Genes

JF - Genes

SN - 2073-4425

M1 - 740

ER -