In this paper according to complex modeling approach and applying cyber-physical systems is proposed to use control theoretic description of supply chain. Cyber-physical systems are automatic control systems, which used to combine various objects by means of multichannel measuring systems with embedded software in various types of hierarchical structures. We modify multiple-model description of the supply chain by adding the dynamic model of measuring and computing operations control. The extended model allow us to describe the process of receiving the necessary information about the current state of the system. Cyber-physical systems have been applied and the classical methods of optimal program and position control have been transferred and modified for supply chain management (management of organizational and technological systems). (C) 2019, IFAC (International Federation of Automatic Control) Hosting by Elsevier Ltd. All rights reserved.